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Graphical integrity issues in open access publications: Detection and patterns of proportional ink violations

Academic graphs are essential for communicating complex scientific ideas and results. To ensure that these graphs truthfully reflect underlying data and relationships, visualization researchers have proposed several principles to guide the graph creation process. However, the extent of violations of...

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Detalles Bibliográficos
Autores principales: Zhuang, Han, Huang, Tzu-Yang, Acuna, Daniel E.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8700024/
https://www.ncbi.nlm.nih.gov/pubmed/34898598
http://dx.doi.org/10.1371/journal.pcbi.1009650
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author Zhuang, Han
Huang, Tzu-Yang
Acuna, Daniel E.
author_facet Zhuang, Han
Huang, Tzu-Yang
Acuna, Daniel E.
author_sort Zhuang, Han
collection PubMed
description Academic graphs are essential for communicating complex scientific ideas and results. To ensure that these graphs truthfully reflect underlying data and relationships, visualization researchers have proposed several principles to guide the graph creation process. However, the extent of violations of these principles in academic publications is unknown. In this work, we develop a deep learning-based method to accurately measure violations of the proportional ink principle (AUC = 0.917), which states that the size of shaded areas in graphs should be consistent with their corresponding quantities. We apply our method to analyze a large sample of bar charts contained in 300K figures from open access publications. Our results estimate that 5% of bar charts contain proportional ink violations. Further analysis reveals that these graphical integrity issues are significantly more prevalent in some research fields, such as psychology and computer science, and some regions of the globe. Additionally, we find no temporal and seniority trends in violations. Finally, apart from openly releasing our large annotated dataset and method, we discuss how computational research integrity could be part of peer-review and the publication processes.
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spelling pubmed-87000242021-12-24 Graphical integrity issues in open access publications: Detection and patterns of proportional ink violations Zhuang, Han Huang, Tzu-Yang Acuna, Daniel E. PLoS Comput Biol Research Article Academic graphs are essential for communicating complex scientific ideas and results. To ensure that these graphs truthfully reflect underlying data and relationships, visualization researchers have proposed several principles to guide the graph creation process. However, the extent of violations of these principles in academic publications is unknown. In this work, we develop a deep learning-based method to accurately measure violations of the proportional ink principle (AUC = 0.917), which states that the size of shaded areas in graphs should be consistent with their corresponding quantities. We apply our method to analyze a large sample of bar charts contained in 300K figures from open access publications. Our results estimate that 5% of bar charts contain proportional ink violations. Further analysis reveals that these graphical integrity issues are significantly more prevalent in some research fields, such as psychology and computer science, and some regions of the globe. Additionally, we find no temporal and seniority trends in violations. Finally, apart from openly releasing our large annotated dataset and method, we discuss how computational research integrity could be part of peer-review and the publication processes. Public Library of Science 2021-12-13 /pmc/articles/PMC8700024/ /pubmed/34898598 http://dx.doi.org/10.1371/journal.pcbi.1009650 Text en © 2021 Zhuang et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Zhuang, Han
Huang, Tzu-Yang
Acuna, Daniel E.
Graphical integrity issues in open access publications: Detection and patterns of proportional ink violations
title Graphical integrity issues in open access publications: Detection and patterns of proportional ink violations
title_full Graphical integrity issues in open access publications: Detection and patterns of proportional ink violations
title_fullStr Graphical integrity issues in open access publications: Detection and patterns of proportional ink violations
title_full_unstemmed Graphical integrity issues in open access publications: Detection and patterns of proportional ink violations
title_short Graphical integrity issues in open access publications: Detection and patterns of proportional ink violations
title_sort graphical integrity issues in open access publications: detection and patterns of proportional ink violations
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8700024/
https://www.ncbi.nlm.nih.gov/pubmed/34898598
http://dx.doi.org/10.1371/journal.pcbi.1009650
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