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Planting Season Impacts Sugarcane Stem Development, Secondary Metabolite Levels, and Natural Antisense Transcription

To reduce the potentially irreversible environmental impacts caused by fossil fuels, the use of renewable energy sources must be increased on a global scale. One promising source of biomass and bioenergy is sugarcane. The study of this crop’s development in different planting seasons can aid in succ...

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Autores principales: Wijma, Maryke, Lembke, Carolina Gimiliani, Diniz, Augusto Lima, Santini, Luciane, Zambotti-Villela, Leonardo, Colepicolo, Pio, Carneiro, Monalisa Sampaio, Souza, Glaucia Mendes
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8700069/
https://www.ncbi.nlm.nih.gov/pubmed/34943959
http://dx.doi.org/10.3390/cells10123451
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author Wijma, Maryke
Lembke, Carolina Gimiliani
Diniz, Augusto Lima
Santini, Luciane
Zambotti-Villela, Leonardo
Colepicolo, Pio
Carneiro, Monalisa Sampaio
Souza, Glaucia Mendes
author_facet Wijma, Maryke
Lembke, Carolina Gimiliani
Diniz, Augusto Lima
Santini, Luciane
Zambotti-Villela, Leonardo
Colepicolo, Pio
Carneiro, Monalisa Sampaio
Souza, Glaucia Mendes
author_sort Wijma, Maryke
collection PubMed
description To reduce the potentially irreversible environmental impacts caused by fossil fuels, the use of renewable energy sources must be increased on a global scale. One promising source of biomass and bioenergy is sugarcane. The study of this crop’s development in different planting seasons can aid in successfully cultivating it in global climate change scenarios. The sugarcane variety SP80-3280 was field grown under two planting seasons with different climatic conditions. A systems biology approach was taken to study the changes on physiological, morphological, agrotechnological, transcriptomics, and metabolomics levels in the leaf +1, and immature, intermediate and mature internodes. Most of the variation found within the transcriptomics and metabolomics profiles is attributed to the differences among the distinct tissues. However, the integration of both transcriptomics and metabolomics data highlighted three main metabolic categories as the principal sources of variation across tissues: amino acid metabolism, biosynthesis of secondary metabolites, and xenobiotics biodegradation and metabolism. Differences in ripening and metabolite levels mainly in leaves and mature internodes may reflect the impact of contrasting environmental conditions on sugarcane development. In general, the same metabolites are found in mature internodes from both “one-year” and “one-and-a-half-year sugarcane”, however, some metabolites (i.e., phenylpropanoids with economic value) and natural antisense transcript expression are only detected in the leaves of “one-year” sugarcane.
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spelling pubmed-87000692021-12-24 Planting Season Impacts Sugarcane Stem Development, Secondary Metabolite Levels, and Natural Antisense Transcription Wijma, Maryke Lembke, Carolina Gimiliani Diniz, Augusto Lima Santini, Luciane Zambotti-Villela, Leonardo Colepicolo, Pio Carneiro, Monalisa Sampaio Souza, Glaucia Mendes Cells Article To reduce the potentially irreversible environmental impacts caused by fossil fuels, the use of renewable energy sources must be increased on a global scale. One promising source of biomass and bioenergy is sugarcane. The study of this crop’s development in different planting seasons can aid in successfully cultivating it in global climate change scenarios. The sugarcane variety SP80-3280 was field grown under two planting seasons with different climatic conditions. A systems biology approach was taken to study the changes on physiological, morphological, agrotechnological, transcriptomics, and metabolomics levels in the leaf +1, and immature, intermediate and mature internodes. Most of the variation found within the transcriptomics and metabolomics profiles is attributed to the differences among the distinct tissues. However, the integration of both transcriptomics and metabolomics data highlighted three main metabolic categories as the principal sources of variation across tissues: amino acid metabolism, biosynthesis of secondary metabolites, and xenobiotics biodegradation and metabolism. Differences in ripening and metabolite levels mainly in leaves and mature internodes may reflect the impact of contrasting environmental conditions on sugarcane development. In general, the same metabolites are found in mature internodes from both “one-year” and “one-and-a-half-year sugarcane”, however, some metabolites (i.e., phenylpropanoids with economic value) and natural antisense transcript expression are only detected in the leaves of “one-year” sugarcane. MDPI 2021-12-08 /pmc/articles/PMC8700069/ /pubmed/34943959 http://dx.doi.org/10.3390/cells10123451 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Wijma, Maryke
Lembke, Carolina Gimiliani
Diniz, Augusto Lima
Santini, Luciane
Zambotti-Villela, Leonardo
Colepicolo, Pio
Carneiro, Monalisa Sampaio
Souza, Glaucia Mendes
Planting Season Impacts Sugarcane Stem Development, Secondary Metabolite Levels, and Natural Antisense Transcription
title Planting Season Impacts Sugarcane Stem Development, Secondary Metabolite Levels, and Natural Antisense Transcription
title_full Planting Season Impacts Sugarcane Stem Development, Secondary Metabolite Levels, and Natural Antisense Transcription
title_fullStr Planting Season Impacts Sugarcane Stem Development, Secondary Metabolite Levels, and Natural Antisense Transcription
title_full_unstemmed Planting Season Impacts Sugarcane Stem Development, Secondary Metabolite Levels, and Natural Antisense Transcription
title_short Planting Season Impacts Sugarcane Stem Development, Secondary Metabolite Levels, and Natural Antisense Transcription
title_sort planting season impacts sugarcane stem development, secondary metabolite levels, and natural antisense transcription
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8700069/
https://www.ncbi.nlm.nih.gov/pubmed/34943959
http://dx.doi.org/10.3390/cells10123451
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