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Evaluation of Reference Genes in Glenea cantor (Fabricius) by Using qRT-PCR

Kapok is the main host of Glenea cantor (Fabricius), which causes serious damage and is difficult to control. In severe cases, it often causes the kapok trees to die continuously, which seriously affects the results of urban landscaping. To provide reference for the functional research on related ge...

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Autores principales: Su, Ran-Ran, Huang, Zhong-Yan, Qin, Chao-Wei, Zheng, Xia-Lin, Lu, Wen, Wang, Xiao-Yun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8701190/
https://www.ncbi.nlm.nih.gov/pubmed/34946935
http://dx.doi.org/10.3390/genes12121984
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author Su, Ran-Ran
Huang, Zhong-Yan
Qin, Chao-Wei
Zheng, Xia-Lin
Lu, Wen
Wang, Xiao-Yun
author_facet Su, Ran-Ran
Huang, Zhong-Yan
Qin, Chao-Wei
Zheng, Xia-Lin
Lu, Wen
Wang, Xiao-Yun
author_sort Su, Ran-Ran
collection PubMed
description Kapok is the main host of Glenea cantor (Fabricius), which causes serious damage and is difficult to control. In severe cases, it often causes the kapok trees to die continuously, which seriously affects the results of urban landscaping. To provide reference for the functional research on related genes in G. cantor, we screened the stable expression of candidate reference genes at different developmental stages (i.e., eggs, larvae, pupae, and adults), in various adult tissues (i.e., head, thorax, abdomen, feet, antennae, and wings), and sexes (i.e., male pupae, female pupae, male adults, and female adults). In this study, 12 candidate reference genes (i.e., ACTINLIKE, ACTININ, TUB, RPL36, RPL32, RPS20, TBP, GAPDH, 18S rRNA, EF1A1, EF1A2, and UBQ) were evaluated using different adult tissues, developmental stages, and sexes. RefFinder, geNorm, NormFinder, and BestKeeper were used to evaluate and comprehensively analyze the stability of the expression of the candidate reference genes. The results show that RPL32 and EF1A1 were the most suitable reference genes in the different adult tissues, and RPL36 and EF1A1 were best at the different developmental stages. RPL36 and EF1A2 were the best fit for the qRT-PCR reference genes in the different sexes, while RPL36 and EF1A1 were the most appropriate qRT-PCR reference genes in all samples. Results from geNorm showed that the optimal number of reference genes was two. We also surveyed the expression of cellulase at the different developmental stages and in the different adult tissues. Results further verified the reliability of the reference genes, and confirmed the best reference genes under the different experimental conditions. This study provides a useful tool for molecular biological studies on G. cantor.
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spelling pubmed-87011902021-12-24 Evaluation of Reference Genes in Glenea cantor (Fabricius) by Using qRT-PCR Su, Ran-Ran Huang, Zhong-Yan Qin, Chao-Wei Zheng, Xia-Lin Lu, Wen Wang, Xiao-Yun Genes (Basel) Article Kapok is the main host of Glenea cantor (Fabricius), which causes serious damage and is difficult to control. In severe cases, it often causes the kapok trees to die continuously, which seriously affects the results of urban landscaping. To provide reference for the functional research on related genes in G. cantor, we screened the stable expression of candidate reference genes at different developmental stages (i.e., eggs, larvae, pupae, and adults), in various adult tissues (i.e., head, thorax, abdomen, feet, antennae, and wings), and sexes (i.e., male pupae, female pupae, male adults, and female adults). In this study, 12 candidate reference genes (i.e., ACTINLIKE, ACTININ, TUB, RPL36, RPL32, RPS20, TBP, GAPDH, 18S rRNA, EF1A1, EF1A2, and UBQ) were evaluated using different adult tissues, developmental stages, and sexes. RefFinder, geNorm, NormFinder, and BestKeeper were used to evaluate and comprehensively analyze the stability of the expression of the candidate reference genes. The results show that RPL32 and EF1A1 were the most suitable reference genes in the different adult tissues, and RPL36 and EF1A1 were best at the different developmental stages. RPL36 and EF1A2 were the best fit for the qRT-PCR reference genes in the different sexes, while RPL36 and EF1A1 were the most appropriate qRT-PCR reference genes in all samples. Results from geNorm showed that the optimal number of reference genes was two. We also surveyed the expression of cellulase at the different developmental stages and in the different adult tissues. Results further verified the reliability of the reference genes, and confirmed the best reference genes under the different experimental conditions. This study provides a useful tool for molecular biological studies on G. cantor. MDPI 2021-12-14 /pmc/articles/PMC8701190/ /pubmed/34946935 http://dx.doi.org/10.3390/genes12121984 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Su, Ran-Ran
Huang, Zhong-Yan
Qin, Chao-Wei
Zheng, Xia-Lin
Lu, Wen
Wang, Xiao-Yun
Evaluation of Reference Genes in Glenea cantor (Fabricius) by Using qRT-PCR
title Evaluation of Reference Genes in Glenea cantor (Fabricius) by Using qRT-PCR
title_full Evaluation of Reference Genes in Glenea cantor (Fabricius) by Using qRT-PCR
title_fullStr Evaluation of Reference Genes in Glenea cantor (Fabricius) by Using qRT-PCR
title_full_unstemmed Evaluation of Reference Genes in Glenea cantor (Fabricius) by Using qRT-PCR
title_short Evaluation of Reference Genes in Glenea cantor (Fabricius) by Using qRT-PCR
title_sort evaluation of reference genes in glenea cantor (fabricius) by using qrt-pcr
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8701190/
https://www.ncbi.nlm.nih.gov/pubmed/34946935
http://dx.doi.org/10.3390/genes12121984
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