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Assessment of Drug Proarrhythmicity Using Artificial Neural Networks With in silico Deterministic Model Outputs

As part of the Comprehensive in vitro Proarrhythmia Assay initiative, methodologies for predicting the occurrence of drug-induced torsade de pointes via computer simulations have been developed and verified recently. However, their predictive performance still requires improvement. Herein, we propos...

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Autores principales: Yoo, Yedam, Marcellinus, Aroli, Jeong, Da Un, Kim, Ki-Suk, Lim, Ki Moo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8703011/
https://www.ncbi.nlm.nih.gov/pubmed/34955882
http://dx.doi.org/10.3389/fphys.2021.761691
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author Yoo, Yedam
Marcellinus, Aroli
Jeong, Da Un
Kim, Ki-Suk
Lim, Ki Moo
author_facet Yoo, Yedam
Marcellinus, Aroli
Jeong, Da Un
Kim, Ki-Suk
Lim, Ki Moo
author_sort Yoo, Yedam
collection PubMed
description As part of the Comprehensive in vitro Proarrhythmia Assay initiative, methodologies for predicting the occurrence of drug-induced torsade de pointes via computer simulations have been developed and verified recently. However, their predictive performance still requires improvement. Herein, we propose an artificial neural networks (ANN) model that uses nine multiple input features, considering the action potential morphology, calcium transient morphology, and charge features to further improve the performance of drug toxicity evaluation. The voltage clamp experimental data for 28 drugs were augmented to 2,000 data entries using an uncertainty quantification technique. By applying these data to the modified O’Hara Rudy in silico model, nine features (dVm/dt(max), AP(resting), APD90, APD50, Ca(resting), CaD90, CaD50, qNet, and qInward) were calculated. These nine features were used as inputs to an ANN model to classify drug toxicity into high-risk, intermediate-risk, and low-risk groups. The model was trained with data from 12 drugs and tested using the data of the remaining 16 drugs. The proposed ANN model demonstrated an AUC of 0.92 in the high-risk group, 0.83 in the intermediate-risk group, and 0.98 in the low-risk group. This was higher than the classification performance of the method proposed in previous studies.
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spelling pubmed-87030112021-12-25 Assessment of Drug Proarrhythmicity Using Artificial Neural Networks With in silico Deterministic Model Outputs Yoo, Yedam Marcellinus, Aroli Jeong, Da Un Kim, Ki-Suk Lim, Ki Moo Front Physiol Physiology As part of the Comprehensive in vitro Proarrhythmia Assay initiative, methodologies for predicting the occurrence of drug-induced torsade de pointes via computer simulations have been developed and verified recently. However, their predictive performance still requires improvement. Herein, we propose an artificial neural networks (ANN) model that uses nine multiple input features, considering the action potential morphology, calcium transient morphology, and charge features to further improve the performance of drug toxicity evaluation. The voltage clamp experimental data for 28 drugs were augmented to 2,000 data entries using an uncertainty quantification technique. By applying these data to the modified O’Hara Rudy in silico model, nine features (dVm/dt(max), AP(resting), APD90, APD50, Ca(resting), CaD90, CaD50, qNet, and qInward) were calculated. These nine features were used as inputs to an ANN model to classify drug toxicity into high-risk, intermediate-risk, and low-risk groups. The model was trained with data from 12 drugs and tested using the data of the remaining 16 drugs. The proposed ANN model demonstrated an AUC of 0.92 in the high-risk group, 0.83 in the intermediate-risk group, and 0.98 in the low-risk group. This was higher than the classification performance of the method proposed in previous studies. Frontiers Media S.A. 2021-12-10 /pmc/articles/PMC8703011/ /pubmed/34955882 http://dx.doi.org/10.3389/fphys.2021.761691 Text en Copyright © 2021 Yoo, Marcellinus, Jeong, Kim and Lim. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Physiology
Yoo, Yedam
Marcellinus, Aroli
Jeong, Da Un
Kim, Ki-Suk
Lim, Ki Moo
Assessment of Drug Proarrhythmicity Using Artificial Neural Networks With in silico Deterministic Model Outputs
title Assessment of Drug Proarrhythmicity Using Artificial Neural Networks With in silico Deterministic Model Outputs
title_full Assessment of Drug Proarrhythmicity Using Artificial Neural Networks With in silico Deterministic Model Outputs
title_fullStr Assessment of Drug Proarrhythmicity Using Artificial Neural Networks With in silico Deterministic Model Outputs
title_full_unstemmed Assessment of Drug Proarrhythmicity Using Artificial Neural Networks With in silico Deterministic Model Outputs
title_short Assessment of Drug Proarrhythmicity Using Artificial Neural Networks With in silico Deterministic Model Outputs
title_sort assessment of drug proarrhythmicity using artificial neural networks with in silico deterministic model outputs
topic Physiology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8703011/
https://www.ncbi.nlm.nih.gov/pubmed/34955882
http://dx.doi.org/10.3389/fphys.2021.761691
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