Cargando…
Temporal Patterns of Bacterial and Viral Communities during Algae Blooms of a Reservoir in Macau
Compositions of microbial communities associated with blooms of algae in a storage reservoir in Macau, China were investigated between 2013 and 2016. Algae were enumerated by visible light microscopy. Profiles of organisms in water were examined by 16S rRNA sequences and viral metagenomics, based on...
Autores principales: | , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2021
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8704429/ https://www.ncbi.nlm.nih.gov/pubmed/34941731 http://dx.doi.org/10.3390/toxins13120894 |
_version_ | 1784621705646309376 |
---|---|
author | Hu, Dini Giesy, John P. Guo, Min Ung, Wai Kin Kong, Yijun Mok, Kai Meng Lee, Simon Ming-Yuen |
author_facet | Hu, Dini Giesy, John P. Guo, Min Ung, Wai Kin Kong, Yijun Mok, Kai Meng Lee, Simon Ming-Yuen |
author_sort | Hu, Dini |
collection | PubMed |
description | Compositions of microbial communities associated with blooms of algae in a storage reservoir in Macau, China were investigated between 2013 and 2016. Algae were enumerated by visible light microscopy. Profiles of organisms in water were examined by 16S rRNA sequences and viral metagenomics, based on next generation sequencing. Results of 16S rRNA sequencing indicated that majority of the identified organisms were bacteria closely related to Proteobacteria, Cyanobacteria, Verrucomicrobia, Bacteroidetes, and Actinobacteria. Metagenomics sequences demonstrated that the dominant virus was Phycodnavirus, accounting for 70% of the total population. Patterns of relative numbers of bacteria in the microbial community and their temporal changes were determined through alpha diversity indices, principal coordinates analysis (PCoA), relative abundance, and visualized by Venn diagrams. Ways in which the bacterial and viral communities are influenced by various water-related variables were elucidated based on redundancy analysis (RDA). Relationships of the relative numbers of bacteria with trophic status in a reservoir used for drinking water in Macau, provided insight into associations of Phycodnavirus and Proteobacteria with changes in blooms of algae. |
format | Online Article Text |
id | pubmed-8704429 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-87044292021-12-25 Temporal Patterns of Bacterial and Viral Communities during Algae Blooms of a Reservoir in Macau Hu, Dini Giesy, John P. Guo, Min Ung, Wai Kin Kong, Yijun Mok, Kai Meng Lee, Simon Ming-Yuen Toxins (Basel) Article Compositions of microbial communities associated with blooms of algae in a storage reservoir in Macau, China were investigated between 2013 and 2016. Algae were enumerated by visible light microscopy. Profiles of organisms in water were examined by 16S rRNA sequences and viral metagenomics, based on next generation sequencing. Results of 16S rRNA sequencing indicated that majority of the identified organisms were bacteria closely related to Proteobacteria, Cyanobacteria, Verrucomicrobia, Bacteroidetes, and Actinobacteria. Metagenomics sequences demonstrated that the dominant virus was Phycodnavirus, accounting for 70% of the total population. Patterns of relative numbers of bacteria in the microbial community and their temporal changes were determined through alpha diversity indices, principal coordinates analysis (PCoA), relative abundance, and visualized by Venn diagrams. Ways in which the bacterial and viral communities are influenced by various water-related variables were elucidated based on redundancy analysis (RDA). Relationships of the relative numbers of bacteria with trophic status in a reservoir used for drinking water in Macau, provided insight into associations of Phycodnavirus and Proteobacteria with changes in blooms of algae. MDPI 2021-12-13 /pmc/articles/PMC8704429/ /pubmed/34941731 http://dx.doi.org/10.3390/toxins13120894 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Hu, Dini Giesy, John P. Guo, Min Ung, Wai Kin Kong, Yijun Mok, Kai Meng Lee, Simon Ming-Yuen Temporal Patterns of Bacterial and Viral Communities during Algae Blooms of a Reservoir in Macau |
title | Temporal Patterns of Bacterial and Viral Communities during Algae Blooms of a Reservoir in Macau |
title_full | Temporal Patterns of Bacterial and Viral Communities during Algae Blooms of a Reservoir in Macau |
title_fullStr | Temporal Patterns of Bacterial and Viral Communities during Algae Blooms of a Reservoir in Macau |
title_full_unstemmed | Temporal Patterns of Bacterial and Viral Communities during Algae Blooms of a Reservoir in Macau |
title_short | Temporal Patterns of Bacterial and Viral Communities during Algae Blooms of a Reservoir in Macau |
title_sort | temporal patterns of bacterial and viral communities during algae blooms of a reservoir in macau |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8704429/ https://www.ncbi.nlm.nih.gov/pubmed/34941731 http://dx.doi.org/10.3390/toxins13120894 |
work_keys_str_mv | AT hudini temporalpatternsofbacterialandviralcommunitiesduringalgaebloomsofareservoirinmacau AT giesyjohnp temporalpatternsofbacterialandviralcommunitiesduringalgaebloomsofareservoirinmacau AT guomin temporalpatternsofbacterialandviralcommunitiesduringalgaebloomsofareservoirinmacau AT ungwaikin temporalpatternsofbacterialandviralcommunitiesduringalgaebloomsofareservoirinmacau AT kongyijun temporalpatternsofbacterialandviralcommunitiesduringalgaebloomsofareservoirinmacau AT mokkaimeng temporalpatternsofbacterialandviralcommunitiesduringalgaebloomsofareservoirinmacau AT leesimonmingyuen temporalpatternsofbacterialandviralcommunitiesduringalgaebloomsofareservoirinmacau |