Cargando…
Predictive Machine Learning Models and Survival Analysis for COVID-19 Prognosis Based on Hematochemical Parameters
The coronavirus disease 2019 (COVID-19) pandemic has affected hundreds of millions of individuals and caused millions of deaths worldwide. Predicting the clinical course of the disease is of pivotal importance to manage patients. Several studies have found hematochemical alterations in COVID-19 pati...
Autores principales: | , , , , , , , , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2021
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8705488/ https://www.ncbi.nlm.nih.gov/pubmed/34960595 http://dx.doi.org/10.3390/s21248503 |
_version_ | 1784621958823936000 |
---|---|
author | Altini, Nicola Brunetti, Antonio Mazzoleni, Stefano Moncelli, Fabrizio Zagaria, Ilenia Prencipe, Berardino Lorusso, Erika Buonamico, Enrico Carpagnano, Giovanna Elisiana Bavaro, Davide Fiore Poliseno, Mariacristina Saracino, Annalisa Schirinzi, Annalisa Laterza, Riccardo Di Serio, Francesca D’Introno, Alessia Pesce, Francesco Bevilacqua, Vitoantonio |
author_facet | Altini, Nicola Brunetti, Antonio Mazzoleni, Stefano Moncelli, Fabrizio Zagaria, Ilenia Prencipe, Berardino Lorusso, Erika Buonamico, Enrico Carpagnano, Giovanna Elisiana Bavaro, Davide Fiore Poliseno, Mariacristina Saracino, Annalisa Schirinzi, Annalisa Laterza, Riccardo Di Serio, Francesca D’Introno, Alessia Pesce, Francesco Bevilacqua, Vitoantonio |
author_sort | Altini, Nicola |
collection | PubMed |
description | The coronavirus disease 2019 (COVID-19) pandemic has affected hundreds of millions of individuals and caused millions of deaths worldwide. Predicting the clinical course of the disease is of pivotal importance to manage patients. Several studies have found hematochemical alterations in COVID-19 patients, such as inflammatory markers. We retrospectively analyzed the anamnestic data and laboratory parameters of 303 patients diagnosed with COVID-19 who were admitted to the Polyclinic Hospital of Bari during the first phase of the COVID-19 global pandemic. After the pre-processing phase, we performed a survival analysis with Kaplan–Meier curves and Cox Regression, with the aim to discover the most unfavorable predictors. The target outcomes were mortality or admission to the intensive care unit (ICU). Different machine learning models were also compared to realize a robust classifier relying on a low number of strongly significant factors to estimate the risk of death or admission to ICU. From the survival analysis, it emerged that the most significant laboratory parameters for both outcomes was C-reactive protein min; [Formula: see text] (95% CI 6.548–49.277, p < 0.001) for death, [Formula: see text] (95% CI 1.000–3.200, p = 0.050) for admission to ICU. The second most important parameter was Erythrocytes max; [Formula: see text] (95% CI 1.141–2.729, p < 0.05) for death, [Formula: see text] (95% CI 0.895–2.452, p = 0.127) for admission to ICU. The best model for predicting the risk of death was the decision tree, which resulted in ROC-AUC of 89.66%, whereas the best model for predicting the admission to ICU was support vector machine, which had ROC-AUC of 95.07%. The hematochemical predictors identified in this study can be utilized as a strong prognostic signature to characterize the severity of the disease in COVID-19 patients. |
format | Online Article Text |
id | pubmed-8705488 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-87054882021-12-25 Predictive Machine Learning Models and Survival Analysis for COVID-19 Prognosis Based on Hematochemical Parameters Altini, Nicola Brunetti, Antonio Mazzoleni, Stefano Moncelli, Fabrizio Zagaria, Ilenia Prencipe, Berardino Lorusso, Erika Buonamico, Enrico Carpagnano, Giovanna Elisiana Bavaro, Davide Fiore Poliseno, Mariacristina Saracino, Annalisa Schirinzi, Annalisa Laterza, Riccardo Di Serio, Francesca D’Introno, Alessia Pesce, Francesco Bevilacqua, Vitoantonio Sensors (Basel) Article The coronavirus disease 2019 (COVID-19) pandemic has affected hundreds of millions of individuals and caused millions of deaths worldwide. Predicting the clinical course of the disease is of pivotal importance to manage patients. Several studies have found hematochemical alterations in COVID-19 patients, such as inflammatory markers. We retrospectively analyzed the anamnestic data and laboratory parameters of 303 patients diagnosed with COVID-19 who were admitted to the Polyclinic Hospital of Bari during the first phase of the COVID-19 global pandemic. After the pre-processing phase, we performed a survival analysis with Kaplan–Meier curves and Cox Regression, with the aim to discover the most unfavorable predictors. The target outcomes were mortality or admission to the intensive care unit (ICU). Different machine learning models were also compared to realize a robust classifier relying on a low number of strongly significant factors to estimate the risk of death or admission to ICU. From the survival analysis, it emerged that the most significant laboratory parameters for both outcomes was C-reactive protein min; [Formula: see text] (95% CI 6.548–49.277, p < 0.001) for death, [Formula: see text] (95% CI 1.000–3.200, p = 0.050) for admission to ICU. The second most important parameter was Erythrocytes max; [Formula: see text] (95% CI 1.141–2.729, p < 0.05) for death, [Formula: see text] (95% CI 0.895–2.452, p = 0.127) for admission to ICU. The best model for predicting the risk of death was the decision tree, which resulted in ROC-AUC of 89.66%, whereas the best model for predicting the admission to ICU was support vector machine, which had ROC-AUC of 95.07%. The hematochemical predictors identified in this study can be utilized as a strong prognostic signature to characterize the severity of the disease in COVID-19 patients. MDPI 2021-12-20 /pmc/articles/PMC8705488/ /pubmed/34960595 http://dx.doi.org/10.3390/s21248503 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Altini, Nicola Brunetti, Antonio Mazzoleni, Stefano Moncelli, Fabrizio Zagaria, Ilenia Prencipe, Berardino Lorusso, Erika Buonamico, Enrico Carpagnano, Giovanna Elisiana Bavaro, Davide Fiore Poliseno, Mariacristina Saracino, Annalisa Schirinzi, Annalisa Laterza, Riccardo Di Serio, Francesca D’Introno, Alessia Pesce, Francesco Bevilacqua, Vitoantonio Predictive Machine Learning Models and Survival Analysis for COVID-19 Prognosis Based on Hematochemical Parameters |
title | Predictive Machine Learning Models and Survival Analysis for COVID-19 Prognosis Based on Hematochemical Parameters |
title_full | Predictive Machine Learning Models and Survival Analysis for COVID-19 Prognosis Based on Hematochemical Parameters |
title_fullStr | Predictive Machine Learning Models and Survival Analysis for COVID-19 Prognosis Based on Hematochemical Parameters |
title_full_unstemmed | Predictive Machine Learning Models and Survival Analysis for COVID-19 Prognosis Based on Hematochemical Parameters |
title_short | Predictive Machine Learning Models and Survival Analysis for COVID-19 Prognosis Based on Hematochemical Parameters |
title_sort | predictive machine learning models and survival analysis for covid-19 prognosis based on hematochemical parameters |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8705488/ https://www.ncbi.nlm.nih.gov/pubmed/34960595 http://dx.doi.org/10.3390/s21248503 |
work_keys_str_mv | AT altininicola predictivemachinelearningmodelsandsurvivalanalysisforcovid19prognosisbasedonhematochemicalparameters AT brunettiantonio predictivemachinelearningmodelsandsurvivalanalysisforcovid19prognosisbasedonhematochemicalparameters AT mazzolenistefano predictivemachinelearningmodelsandsurvivalanalysisforcovid19prognosisbasedonhematochemicalparameters AT moncellifabrizio predictivemachinelearningmodelsandsurvivalanalysisforcovid19prognosisbasedonhematochemicalparameters AT zagariailenia predictivemachinelearningmodelsandsurvivalanalysisforcovid19prognosisbasedonhematochemicalparameters AT prencipeberardino predictivemachinelearningmodelsandsurvivalanalysisforcovid19prognosisbasedonhematochemicalparameters AT lorussoerika predictivemachinelearningmodelsandsurvivalanalysisforcovid19prognosisbasedonhematochemicalparameters AT buonamicoenrico predictivemachinelearningmodelsandsurvivalanalysisforcovid19prognosisbasedonhematochemicalparameters AT carpagnanogiovannaelisiana predictivemachinelearningmodelsandsurvivalanalysisforcovid19prognosisbasedonhematochemicalparameters AT bavarodavidefiore predictivemachinelearningmodelsandsurvivalanalysisforcovid19prognosisbasedonhematochemicalparameters AT polisenomariacristina predictivemachinelearningmodelsandsurvivalanalysisforcovid19prognosisbasedonhematochemicalparameters AT saracinoannalisa predictivemachinelearningmodelsandsurvivalanalysisforcovid19prognosisbasedonhematochemicalparameters AT schirinziannalisa predictivemachinelearningmodelsandsurvivalanalysisforcovid19prognosisbasedonhematochemicalparameters AT laterzariccardo predictivemachinelearningmodelsandsurvivalanalysisforcovid19prognosisbasedonhematochemicalparameters AT diseriofrancesca predictivemachinelearningmodelsandsurvivalanalysisforcovid19prognosisbasedonhematochemicalparameters AT dintronoalessia predictivemachinelearningmodelsandsurvivalanalysisforcovid19prognosisbasedonhematochemicalparameters AT pescefrancesco predictivemachinelearningmodelsandsurvivalanalysisforcovid19prognosisbasedonhematochemicalparameters AT bevilacquavitoantonio predictivemachinelearningmodelsandsurvivalanalysisforcovid19prognosisbasedonhematochemicalparameters |