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Does COVID-19 Clinical Status Associate with Outcome Severity? An Unsupervised Machine Learning Approach for Knowledge Extraction

Since the beginning of the COVID-19 pandemic, 195 million people have been infected and 4.2 million have died from the disease or its side effects. Physicians, healthcare scientists and medical staff continuously try to deal with overloaded hospital admissions, while in parallel, they try to identif...

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Autores principales: Karlafti, Eleni, Anagnostis, Athanasios, Kotzakioulafi, Evangelia, Vittoraki, Michaela Chrysanthi, Eufraimidou, Ariadni, Kasarjyan, Kristine, Eufraimidou, Katerina, Dimitriadou, Georgia, Kakanis, Chrisovalantis, Anthopoulos, Michail, Kaiafa, Georgia, Savopoulos, Christos, Didangelos, Triantafyllos
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8705973/
https://www.ncbi.nlm.nih.gov/pubmed/34945852
http://dx.doi.org/10.3390/jpm11121380
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author Karlafti, Eleni
Anagnostis, Athanasios
Kotzakioulafi, Evangelia
Vittoraki, Michaela Chrysanthi
Eufraimidou, Ariadni
Kasarjyan, Kristine
Eufraimidou, Katerina
Dimitriadou, Georgia
Kakanis, Chrisovalantis
Anthopoulos, Michail
Kaiafa, Georgia
Savopoulos, Christos
Didangelos, Triantafyllos
author_facet Karlafti, Eleni
Anagnostis, Athanasios
Kotzakioulafi, Evangelia
Vittoraki, Michaela Chrysanthi
Eufraimidou, Ariadni
Kasarjyan, Kristine
Eufraimidou, Katerina
Dimitriadou, Georgia
Kakanis, Chrisovalantis
Anthopoulos, Michail
Kaiafa, Georgia
Savopoulos, Christos
Didangelos, Triantafyllos
author_sort Karlafti, Eleni
collection PubMed
description Since the beginning of the COVID-19 pandemic, 195 million people have been infected and 4.2 million have died from the disease or its side effects. Physicians, healthcare scientists and medical staff continuously try to deal with overloaded hospital admissions, while in parallel, they try to identify meaningful correlations between the severity of infected patients with their symptoms, comorbidities and biomarkers. Artificial intelligence (AI) and machine learning (ML) have been used recently in many areas related to COVID-19 healthcare. The main goal is to manage effectively the wide variety of issues related to COVID-19 and its consequences. The existing applications of ML to COVID-19 healthcare are based on supervised classifications which require a labeled training dataset, serving as reference point for learning, as well as predefined classes. However, the existing knowledge about COVID-19 and its consequences is still not solid and the points of common agreement among different scientific communities are still unclear. Therefore, this study aimed to follow an unsupervised clustering approach, where prior knowledge is not required (tabula rasa). More specifically, 268 hospitalized patients at the First Propaedeutic Department of Internal Medicine of AHEPA University Hospital of Thessaloniki were assessed in terms of 40 clinical variables (numerical and categorical), leading to a high-dimensionality dataset. Dimensionality reduction was performed by applying a principal component analysis (PCA) on the numerical part of the dataset and a multiple correspondence analysis (MCA) on the categorical part of the dataset. Then, the Bayesian information criterion (BIC) was applied to Gaussian mixture models (GMM) in order to identify the optimal number of clusters under which the best grouping of patients occurs. The proposed methodology identified four clusters of patients with similar clinical characteristics. The analysis revealed a cluster of asymptomatic patients that resulted in death at a rate of 23.8%. This striking result forces us to reconsider the relationship between the severity of COVID-19 clinical symptoms and the patient’s mortality.
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spelling pubmed-87059732021-12-25 Does COVID-19 Clinical Status Associate with Outcome Severity? An Unsupervised Machine Learning Approach for Knowledge Extraction Karlafti, Eleni Anagnostis, Athanasios Kotzakioulafi, Evangelia Vittoraki, Michaela Chrysanthi Eufraimidou, Ariadni Kasarjyan, Kristine Eufraimidou, Katerina Dimitriadou, Georgia Kakanis, Chrisovalantis Anthopoulos, Michail Kaiafa, Georgia Savopoulos, Christos Didangelos, Triantafyllos J Pers Med Article Since the beginning of the COVID-19 pandemic, 195 million people have been infected and 4.2 million have died from the disease or its side effects. Physicians, healthcare scientists and medical staff continuously try to deal with overloaded hospital admissions, while in parallel, they try to identify meaningful correlations between the severity of infected patients with their symptoms, comorbidities and biomarkers. Artificial intelligence (AI) and machine learning (ML) have been used recently in many areas related to COVID-19 healthcare. The main goal is to manage effectively the wide variety of issues related to COVID-19 and its consequences. The existing applications of ML to COVID-19 healthcare are based on supervised classifications which require a labeled training dataset, serving as reference point for learning, as well as predefined classes. However, the existing knowledge about COVID-19 and its consequences is still not solid and the points of common agreement among different scientific communities are still unclear. Therefore, this study aimed to follow an unsupervised clustering approach, where prior knowledge is not required (tabula rasa). More specifically, 268 hospitalized patients at the First Propaedeutic Department of Internal Medicine of AHEPA University Hospital of Thessaloniki were assessed in terms of 40 clinical variables (numerical and categorical), leading to a high-dimensionality dataset. Dimensionality reduction was performed by applying a principal component analysis (PCA) on the numerical part of the dataset and a multiple correspondence analysis (MCA) on the categorical part of the dataset. Then, the Bayesian information criterion (BIC) was applied to Gaussian mixture models (GMM) in order to identify the optimal number of clusters under which the best grouping of patients occurs. The proposed methodology identified four clusters of patients with similar clinical characteristics. The analysis revealed a cluster of asymptomatic patients that resulted in death at a rate of 23.8%. This striking result forces us to reconsider the relationship between the severity of COVID-19 clinical symptoms and the patient’s mortality. MDPI 2021-12-17 /pmc/articles/PMC8705973/ /pubmed/34945852 http://dx.doi.org/10.3390/jpm11121380 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Karlafti, Eleni
Anagnostis, Athanasios
Kotzakioulafi, Evangelia
Vittoraki, Michaela Chrysanthi
Eufraimidou, Ariadni
Kasarjyan, Kristine
Eufraimidou, Katerina
Dimitriadou, Georgia
Kakanis, Chrisovalantis
Anthopoulos, Michail
Kaiafa, Georgia
Savopoulos, Christos
Didangelos, Triantafyllos
Does COVID-19 Clinical Status Associate with Outcome Severity? An Unsupervised Machine Learning Approach for Knowledge Extraction
title Does COVID-19 Clinical Status Associate with Outcome Severity? An Unsupervised Machine Learning Approach for Knowledge Extraction
title_full Does COVID-19 Clinical Status Associate with Outcome Severity? An Unsupervised Machine Learning Approach for Knowledge Extraction
title_fullStr Does COVID-19 Clinical Status Associate with Outcome Severity? An Unsupervised Machine Learning Approach for Knowledge Extraction
title_full_unstemmed Does COVID-19 Clinical Status Associate with Outcome Severity? An Unsupervised Machine Learning Approach for Knowledge Extraction
title_short Does COVID-19 Clinical Status Associate with Outcome Severity? An Unsupervised Machine Learning Approach for Knowledge Extraction
title_sort does covid-19 clinical status associate with outcome severity? an unsupervised machine learning approach for knowledge extraction
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8705973/
https://www.ncbi.nlm.nih.gov/pubmed/34945852
http://dx.doi.org/10.3390/jpm11121380
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