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Central hubs prediction for bio networks by directed hypergraph - GA with validation to COVID-19 PPI()
Network structures have attracted much interest and have been rigorously studied in the past two decades. Researchers used many mathematical tools to represent these networks, and in recent days, hypergraphs play a vital role in this analysis. This paper presents an efficient technique to find the i...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier B.V.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8709727/ https://www.ncbi.nlm.nih.gov/pubmed/34975182 http://dx.doi.org/10.1016/j.patrec.2021.12.015 |
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author | Gopalakrishnan, Sathyanarayanan Sridharan, Supriya Nayak, Soumya Ranjan Nayak, Janmenjoy Venkataraman, Swaminathan |
author_facet | Gopalakrishnan, Sathyanarayanan Sridharan, Supriya Nayak, Soumya Ranjan Nayak, Janmenjoy Venkataraman, Swaminathan |
author_sort | Gopalakrishnan, Sathyanarayanan |
collection | PubMed |
description | Network structures have attracted much interest and have been rigorously studied in the past two decades. Researchers used many mathematical tools to represent these networks, and in recent days, hypergraphs play a vital role in this analysis. This paper presents an efficient technique to find the influential nodes using centrality measure of weighted directed hypergraph. Genetic Algorithm is exploited for tuning the weights of the node in the weighted directed hypergraph through which the characterization of the strength of the nodes, such as strong and weak ties by statistical measurements (mean, standard deviation, and quartiles) is identified effectively. Also, the proposed work is applied to various biological networks for identification of influential nodes and results shows the prominence the work over the existing measures. Furthermore, the technique has been applied to COVID-19 viral protein interactions. The proposed algorithm identified some critical human proteins that belong to the enzymes TMPRSS2, ACE2, and AT-II, which have a considerable role in hosting COVID-19 viral proteins and causes for various types of diseases. Hence these proteins can be targeted in drug design for an effective therapeutic against COVID-19. |
format | Online Article Text |
id | pubmed-8709727 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Elsevier B.V. |
record_format | MEDLINE/PubMed |
spelling | pubmed-87097272021-12-28 Central hubs prediction for bio networks by directed hypergraph - GA with validation to COVID-19 PPI() Gopalakrishnan, Sathyanarayanan Sridharan, Supriya Nayak, Soumya Ranjan Nayak, Janmenjoy Venkataraman, Swaminathan Pattern Recognit Lett Article Network structures have attracted much interest and have been rigorously studied in the past two decades. Researchers used many mathematical tools to represent these networks, and in recent days, hypergraphs play a vital role in this analysis. This paper presents an efficient technique to find the influential nodes using centrality measure of weighted directed hypergraph. Genetic Algorithm is exploited for tuning the weights of the node in the weighted directed hypergraph through which the characterization of the strength of the nodes, such as strong and weak ties by statistical measurements (mean, standard deviation, and quartiles) is identified effectively. Also, the proposed work is applied to various biological networks for identification of influential nodes and results shows the prominence the work over the existing measures. Furthermore, the technique has been applied to COVID-19 viral protein interactions. The proposed algorithm identified some critical human proteins that belong to the enzymes TMPRSS2, ACE2, and AT-II, which have a considerable role in hosting COVID-19 viral proteins and causes for various types of diseases. Hence these proteins can be targeted in drug design for an effective therapeutic against COVID-19. Elsevier B.V. 2022-01 2021-12-25 /pmc/articles/PMC8709727/ /pubmed/34975182 http://dx.doi.org/10.1016/j.patrec.2021.12.015 Text en © 2021 Elsevier B.V. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active. |
spellingShingle | Article Gopalakrishnan, Sathyanarayanan Sridharan, Supriya Nayak, Soumya Ranjan Nayak, Janmenjoy Venkataraman, Swaminathan Central hubs prediction for bio networks by directed hypergraph - GA with validation to COVID-19 PPI() |
title | Central hubs prediction for bio networks by directed hypergraph - GA with validation to COVID-19 PPI() |
title_full | Central hubs prediction for bio networks by directed hypergraph - GA with validation to COVID-19 PPI() |
title_fullStr | Central hubs prediction for bio networks by directed hypergraph - GA with validation to COVID-19 PPI() |
title_full_unstemmed | Central hubs prediction for bio networks by directed hypergraph - GA with validation to COVID-19 PPI() |
title_short | Central hubs prediction for bio networks by directed hypergraph - GA with validation to COVID-19 PPI() |
title_sort | central hubs prediction for bio networks by directed hypergraph - ga with validation to covid-19 ppi() |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8709727/ https://www.ncbi.nlm.nih.gov/pubmed/34975182 http://dx.doi.org/10.1016/j.patrec.2021.12.015 |
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