Cargando…
Significance of CD47 and Its Association With Tumor Immune Microenvironment Heterogeneity in Ovarian Cancer
BACKGROUND: It was reported that tumor heterogeneity and the surrounding tumor microenvironment (TME) in ovarian cancer affects immunotherapy efficacy and patient outcomes. And the TME of ovarian cancer is intrinsically heterogeneous. CD47 plays vital roles in cell functional behavior and immune hom...
Autores principales: | , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2021
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8710451/ https://www.ncbi.nlm.nih.gov/pubmed/34966389 http://dx.doi.org/10.3389/fimmu.2021.768115 |
_version_ | 1784623156309262336 |
---|---|
author | Yu, Lan Ding, Yi Wan, Ting Deng, Ting Huang, He Liu, Jihong |
author_facet | Yu, Lan Ding, Yi Wan, Ting Deng, Ting Huang, He Liu, Jihong |
author_sort | Yu, Lan |
collection | PubMed |
description | BACKGROUND: It was reported that tumor heterogeneity and the surrounding tumor microenvironment (TME) in ovarian cancer affects immunotherapy efficacy and patient outcomes. And the TME of ovarian cancer is intrinsically heterogeneous. CD47 plays vital roles in cell functional behavior and immune homeostasis relating to cancer prognosis. But how it affects TME and its contribution to heterogeneity in ovarian cancer has not been fully illustrated. Therefore, we aimed to identify a prognostic biomarker which may help explain tumor immune microenvironment heterogeneity of ovarian cancer. METHODS: Cancer single-cell state atlas (CancerSEA) was used to evaluate functional role of CD47. Several bioinformatics database including Oncomine, Gene Expression Profiling Interaction Analysis (GEPIA), Tumor Immune Estimation Resource (TIMER), The Human Protein Atlas (HPA), Ualcan and Kaplan-Meier plotter (KM plotter) were applied to illustrate correlation of CD47 with ovarian cancer prognosis and immune infiltration. Tumor Immune Single-cell Hub (TISCH) single cell database was employed to evaluate correlation of CD47 with tumor microenvironment. GeneMANIA was implemented to identify regulation networks of CD47. Differentially expressed genes (DEGs) between CD47 high and low expression groups were analyzed with R package DESeq2. Kyoto encyclopedia of genes and genomes (KEGG) and Gene Set Enrichment Analysis (GSEA) were utilized to explore how CD47 affect the immune related cell signaling pathway. RESULTS: CD47 expression was upregulated and connected to worse OS and PFS in ovarian cancer. Close relation was found between CD47 expression level and immune infiltration in ovarian cancer, especially with Treg cells, Monocytes, Macrophages and T cell exhaustion (P<0.05). The CD47 expression level was relatively low in plasma cells, dendritic cells and Mono/Macro cells of OV_GSE115007, in myofibroblasts, fibroblasts and endothelial cells of OV_GSE118828, compared to malignant cells of OV_GSE118828 dataset. The cell components and distribution in primary and metastatic ovarian cancer are quite distinct, which may lead to TME heterogeneity of ovarian cancer. CONCLUSION: Our results indicated that CD47 is closely correlated to ovarian cancer immune microenvironment and might induce ovarian cancer heterogeneity. Therefore, CD47 may be used as a candidate prognostic biomarker and provide us with new insights into potential immunotherapy in ovarian cancer patients. |
format | Online Article Text |
id | pubmed-8710451 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-87104512021-12-28 Significance of CD47 and Its Association With Tumor Immune Microenvironment Heterogeneity in Ovarian Cancer Yu, Lan Ding, Yi Wan, Ting Deng, Ting Huang, He Liu, Jihong Front Immunol Immunology BACKGROUND: It was reported that tumor heterogeneity and the surrounding tumor microenvironment (TME) in ovarian cancer affects immunotherapy efficacy and patient outcomes. And the TME of ovarian cancer is intrinsically heterogeneous. CD47 plays vital roles in cell functional behavior and immune homeostasis relating to cancer prognosis. But how it affects TME and its contribution to heterogeneity in ovarian cancer has not been fully illustrated. Therefore, we aimed to identify a prognostic biomarker which may help explain tumor immune microenvironment heterogeneity of ovarian cancer. METHODS: Cancer single-cell state atlas (CancerSEA) was used to evaluate functional role of CD47. Several bioinformatics database including Oncomine, Gene Expression Profiling Interaction Analysis (GEPIA), Tumor Immune Estimation Resource (TIMER), The Human Protein Atlas (HPA), Ualcan and Kaplan-Meier plotter (KM plotter) were applied to illustrate correlation of CD47 with ovarian cancer prognosis and immune infiltration. Tumor Immune Single-cell Hub (TISCH) single cell database was employed to evaluate correlation of CD47 with tumor microenvironment. GeneMANIA was implemented to identify regulation networks of CD47. Differentially expressed genes (DEGs) between CD47 high and low expression groups were analyzed with R package DESeq2. Kyoto encyclopedia of genes and genomes (KEGG) and Gene Set Enrichment Analysis (GSEA) were utilized to explore how CD47 affect the immune related cell signaling pathway. RESULTS: CD47 expression was upregulated and connected to worse OS and PFS in ovarian cancer. Close relation was found between CD47 expression level and immune infiltration in ovarian cancer, especially with Treg cells, Monocytes, Macrophages and T cell exhaustion (P<0.05). The CD47 expression level was relatively low in plasma cells, dendritic cells and Mono/Macro cells of OV_GSE115007, in myofibroblasts, fibroblasts and endothelial cells of OV_GSE118828, compared to malignant cells of OV_GSE118828 dataset. The cell components and distribution in primary and metastatic ovarian cancer are quite distinct, which may lead to TME heterogeneity of ovarian cancer. CONCLUSION: Our results indicated that CD47 is closely correlated to ovarian cancer immune microenvironment and might induce ovarian cancer heterogeneity. Therefore, CD47 may be used as a candidate prognostic biomarker and provide us with new insights into potential immunotherapy in ovarian cancer patients. Frontiers Media S.A. 2021-12-13 /pmc/articles/PMC8710451/ /pubmed/34966389 http://dx.doi.org/10.3389/fimmu.2021.768115 Text en Copyright © 2021 Yu, Ding, Wan, Deng, Huang and Liu https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Immunology Yu, Lan Ding, Yi Wan, Ting Deng, Ting Huang, He Liu, Jihong Significance of CD47 and Its Association With Tumor Immune Microenvironment Heterogeneity in Ovarian Cancer |
title | Significance of CD47 and Its Association With Tumor Immune Microenvironment Heterogeneity in Ovarian Cancer |
title_full | Significance of CD47 and Its Association With Tumor Immune Microenvironment Heterogeneity in Ovarian Cancer |
title_fullStr | Significance of CD47 and Its Association With Tumor Immune Microenvironment Heterogeneity in Ovarian Cancer |
title_full_unstemmed | Significance of CD47 and Its Association With Tumor Immune Microenvironment Heterogeneity in Ovarian Cancer |
title_short | Significance of CD47 and Its Association With Tumor Immune Microenvironment Heterogeneity in Ovarian Cancer |
title_sort | significance of cd47 and its association with tumor immune microenvironment heterogeneity in ovarian cancer |
topic | Immunology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8710451/ https://www.ncbi.nlm.nih.gov/pubmed/34966389 http://dx.doi.org/10.3389/fimmu.2021.768115 |
work_keys_str_mv | AT yulan significanceofcd47anditsassociationwithtumorimmunemicroenvironmentheterogeneityinovariancancer AT dingyi significanceofcd47anditsassociationwithtumorimmunemicroenvironmentheterogeneityinovariancancer AT wanting significanceofcd47anditsassociationwithtumorimmunemicroenvironmentheterogeneityinovariancancer AT dengting significanceofcd47anditsassociationwithtumorimmunemicroenvironmentheterogeneityinovariancancer AT huanghe significanceofcd47anditsassociationwithtumorimmunemicroenvironmentheterogeneityinovariancancer AT liujihong significanceofcd47anditsassociationwithtumorimmunemicroenvironmentheterogeneityinovariancancer |