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Boosting the power of transcriptomics by developing an efficient gene expression profiling approach

Recent advances in plant genomics are scaling up gene expression profiling from the individual level to the population level, making transcriptomics a more powerful tool while deciphering the genome function. This study developed an efficient 3′RNA‐seq method, Simplified Poly(A) Anchored Sequencing...

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Detalles Bibliográficos
Autores principales: Wang, Jing, Xu, Jun, Yang, Xiaohan, Xu, Song, Zhang, Ming, Lu, Fei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8710826/
https://www.ncbi.nlm.nih.gov/pubmed/34510693
http://dx.doi.org/10.1111/pbi.13706
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author Wang, Jing
Xu, Jun
Yang, Xiaohan
Xu, Song
Zhang, Ming
Lu, Fei
author_facet Wang, Jing
Xu, Jun
Yang, Xiaohan
Xu, Song
Zhang, Ming
Lu, Fei
author_sort Wang, Jing
collection PubMed
description Recent advances in plant genomics are scaling up gene expression profiling from the individual level to the population level, making transcriptomics a more powerful tool while deciphering the genome function. This study developed an efficient 3′RNA‐seq method, Simplified Poly(A) Anchored Sequencing (SiPAS), to perform large‐scale experiments of gene expression quantification. Aside from being cost‐effective, by conducting a comprehensive performance assessment of SiPAS in hexaploid wheat, we demonstrated that SiPAS is highly sensitive, accurate, and reproducible while quantifying gene expression. Our method is anticipated to boost studies of population transcriptomics in plants and improve our understanding of genome biology.
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spelling pubmed-87108262022-01-05 Boosting the power of transcriptomics by developing an efficient gene expression profiling approach Wang, Jing Xu, Jun Yang, Xiaohan Xu, Song Zhang, Ming Lu, Fei Plant Biotechnol J Research Articles Recent advances in plant genomics are scaling up gene expression profiling from the individual level to the population level, making transcriptomics a more powerful tool while deciphering the genome function. This study developed an efficient 3′RNA‐seq method, Simplified Poly(A) Anchored Sequencing (SiPAS), to perform large‐scale experiments of gene expression quantification. Aside from being cost‐effective, by conducting a comprehensive performance assessment of SiPAS in hexaploid wheat, we demonstrated that SiPAS is highly sensitive, accurate, and reproducible while quantifying gene expression. Our method is anticipated to boost studies of population transcriptomics in plants and improve our understanding of genome biology. John Wiley and Sons Inc. 2021-09-23 2022-01 /pmc/articles/PMC8710826/ /pubmed/34510693 http://dx.doi.org/10.1111/pbi.13706 Text en © 2021 The Authors. Plant Biotechnology Journal published by Society for Experimental Biology and The Association of Applied Biologists and John Wiley & Sons Ltd. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ (https://creativecommons.org/licenses/by-nc-nd/4.0/) License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made.
spellingShingle Research Articles
Wang, Jing
Xu, Jun
Yang, Xiaohan
Xu, Song
Zhang, Ming
Lu, Fei
Boosting the power of transcriptomics by developing an efficient gene expression profiling approach
title Boosting the power of transcriptomics by developing an efficient gene expression profiling approach
title_full Boosting the power of transcriptomics by developing an efficient gene expression profiling approach
title_fullStr Boosting the power of transcriptomics by developing an efficient gene expression profiling approach
title_full_unstemmed Boosting the power of transcriptomics by developing an efficient gene expression profiling approach
title_short Boosting the power of transcriptomics by developing an efficient gene expression profiling approach
title_sort boosting the power of transcriptomics by developing an efficient gene expression profiling approach
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8710826/
https://www.ncbi.nlm.nih.gov/pubmed/34510693
http://dx.doi.org/10.1111/pbi.13706
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