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Boosting the power of transcriptomics by developing an efficient gene expression profiling approach
Recent advances in plant genomics are scaling up gene expression profiling from the individual level to the population level, making transcriptomics a more powerful tool while deciphering the genome function. This study developed an efficient 3′RNA‐seq method, Simplified Poly(A) Anchored Sequencing...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8710826/ https://www.ncbi.nlm.nih.gov/pubmed/34510693 http://dx.doi.org/10.1111/pbi.13706 |
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author | Wang, Jing Xu, Jun Yang, Xiaohan Xu, Song Zhang, Ming Lu, Fei |
author_facet | Wang, Jing Xu, Jun Yang, Xiaohan Xu, Song Zhang, Ming Lu, Fei |
author_sort | Wang, Jing |
collection | PubMed |
description | Recent advances in plant genomics are scaling up gene expression profiling from the individual level to the population level, making transcriptomics a more powerful tool while deciphering the genome function. This study developed an efficient 3′RNA‐seq method, Simplified Poly(A) Anchored Sequencing (SiPAS), to perform large‐scale experiments of gene expression quantification. Aside from being cost‐effective, by conducting a comprehensive performance assessment of SiPAS in hexaploid wheat, we demonstrated that SiPAS is highly sensitive, accurate, and reproducible while quantifying gene expression. Our method is anticipated to boost studies of population transcriptomics in plants and improve our understanding of genome biology. |
format | Online Article Text |
id | pubmed-8710826 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-87108262022-01-05 Boosting the power of transcriptomics by developing an efficient gene expression profiling approach Wang, Jing Xu, Jun Yang, Xiaohan Xu, Song Zhang, Ming Lu, Fei Plant Biotechnol J Research Articles Recent advances in plant genomics are scaling up gene expression profiling from the individual level to the population level, making transcriptomics a more powerful tool while deciphering the genome function. This study developed an efficient 3′RNA‐seq method, Simplified Poly(A) Anchored Sequencing (SiPAS), to perform large‐scale experiments of gene expression quantification. Aside from being cost‐effective, by conducting a comprehensive performance assessment of SiPAS in hexaploid wheat, we demonstrated that SiPAS is highly sensitive, accurate, and reproducible while quantifying gene expression. Our method is anticipated to boost studies of population transcriptomics in plants and improve our understanding of genome biology. John Wiley and Sons Inc. 2021-09-23 2022-01 /pmc/articles/PMC8710826/ /pubmed/34510693 http://dx.doi.org/10.1111/pbi.13706 Text en © 2021 The Authors. Plant Biotechnology Journal published by Society for Experimental Biology and The Association of Applied Biologists and John Wiley & Sons Ltd. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ (https://creativecommons.org/licenses/by-nc-nd/4.0/) License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made. |
spellingShingle | Research Articles Wang, Jing Xu, Jun Yang, Xiaohan Xu, Song Zhang, Ming Lu, Fei Boosting the power of transcriptomics by developing an efficient gene expression profiling approach |
title | Boosting the power of transcriptomics by developing an efficient gene expression profiling approach |
title_full | Boosting the power of transcriptomics by developing an efficient gene expression profiling approach |
title_fullStr | Boosting the power of transcriptomics by developing an efficient gene expression profiling approach |
title_full_unstemmed | Boosting the power of transcriptomics by developing an efficient gene expression profiling approach |
title_short | Boosting the power of transcriptomics by developing an efficient gene expression profiling approach |
title_sort | boosting the power of transcriptomics by developing an efficient gene expression profiling approach |
topic | Research Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8710826/ https://www.ncbi.nlm.nih.gov/pubmed/34510693 http://dx.doi.org/10.1111/pbi.13706 |
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