Cargando…

Indirect supervision applied to COVID-19 and pneumonia classification

The novel coronavirus 19 (COVID-19) continues to have a devastating effect around the globe, leading many scientists and clinicians to actively seek to develop new techniques to assist with the tackling of this disease. Modern machine learning methods have shown promise in their adoption to assist t...

Descripción completa

Detalles Bibliográficos
Autores principales: Danilov, Viacheslav V., Proutski, Alex, Karpovsky, Alex, Kirpich, Alexander, Litmanovich, Diana, Nefaridze, Dato, Talalov, Oleg, Semyonov, Semyon, Koniukhovskii, Vladimir, Shvartc, Vladimir, Gankin, Yuriy
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Authors. Published by Elsevier Ltd. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8712713/
https://www.ncbi.nlm.nih.gov/pubmed/34977331
http://dx.doi.org/10.1016/j.imu.2021.100835
_version_ 1784623614065115136
author Danilov, Viacheslav V.
Proutski, Alex
Karpovsky, Alex
Kirpich, Alexander
Litmanovich, Diana
Nefaridze, Dato
Talalov, Oleg
Semyonov, Semyon
Koniukhovskii, Vladimir
Shvartc, Vladimir
Gankin, Yuriy
author_facet Danilov, Viacheslav V.
Proutski, Alex
Karpovsky, Alex
Kirpich, Alexander
Litmanovich, Diana
Nefaridze, Dato
Talalov, Oleg
Semyonov, Semyon
Koniukhovskii, Vladimir
Shvartc, Vladimir
Gankin, Yuriy
author_sort Danilov, Viacheslav V.
collection PubMed
description The novel coronavirus 19 (COVID-19) continues to have a devastating effect around the globe, leading many scientists and clinicians to actively seek to develop new techniques to assist with the tackling of this disease. Modern machine learning methods have shown promise in their adoption to assist the healthcare industry through their data and analytics-driven decision making, inspiring researchers to develop new angles to fight the virus. In this paper, we aim to develop a CNN-based method for the detection of COVID-19 by utilizing patients' chest X-ray images. Developing upon the inclusion of convolutional units, the proposed method makes use of indirect supervision based on Grad-CAM. This technique is used in the training process where Grad-CAM's attention heatmaps support the network's predictions. Despite recent progress, scarcity of data has thus far limited the development of a robust solution. We extend upon existing work by combining publicly available data across 5 different sources and carefully annotate the comprising images across three categories: normal, pneumonia, and COVID-19. To achieve a high classification accuracy, we propose a training pipeline based on indirect supervision of traditional classification networks, where the guidance is directed by an external algorithm. With this method, we observed that the widely used, standard networks can achieve an accuracy comparable to tailor-made models, specifically for COVID-19, with one network in particular, VGG-16, outperforming the best of the tailor-made models.
format Online
Article
Text
id pubmed-8712713
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher The Authors. Published by Elsevier Ltd.
record_format MEDLINE/PubMed
spelling pubmed-87127132021-12-28 Indirect supervision applied to COVID-19 and pneumonia classification Danilov, Viacheslav V. Proutski, Alex Karpovsky, Alex Kirpich, Alexander Litmanovich, Diana Nefaridze, Dato Talalov, Oleg Semyonov, Semyon Koniukhovskii, Vladimir Shvartc, Vladimir Gankin, Yuriy Inform Med Unlocked Article The novel coronavirus 19 (COVID-19) continues to have a devastating effect around the globe, leading many scientists and clinicians to actively seek to develop new techniques to assist with the tackling of this disease. Modern machine learning methods have shown promise in their adoption to assist the healthcare industry through their data and analytics-driven decision making, inspiring researchers to develop new angles to fight the virus. In this paper, we aim to develop a CNN-based method for the detection of COVID-19 by utilizing patients' chest X-ray images. Developing upon the inclusion of convolutional units, the proposed method makes use of indirect supervision based on Grad-CAM. This technique is used in the training process where Grad-CAM's attention heatmaps support the network's predictions. Despite recent progress, scarcity of data has thus far limited the development of a robust solution. We extend upon existing work by combining publicly available data across 5 different sources and carefully annotate the comprising images across three categories: normal, pneumonia, and COVID-19. To achieve a high classification accuracy, we propose a training pipeline based on indirect supervision of traditional classification networks, where the guidance is directed by an external algorithm. With this method, we observed that the widely used, standard networks can achieve an accuracy comparable to tailor-made models, specifically for COVID-19, with one network in particular, VGG-16, outperforming the best of the tailor-made models. The Authors. Published by Elsevier Ltd. 2022 2021-12-28 /pmc/articles/PMC8712713/ /pubmed/34977331 http://dx.doi.org/10.1016/j.imu.2021.100835 Text en © 2021 The Authors Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Article
Danilov, Viacheslav V.
Proutski, Alex
Karpovsky, Alex
Kirpich, Alexander
Litmanovich, Diana
Nefaridze, Dato
Talalov, Oleg
Semyonov, Semyon
Koniukhovskii, Vladimir
Shvartc, Vladimir
Gankin, Yuriy
Indirect supervision applied to COVID-19 and pneumonia classification
title Indirect supervision applied to COVID-19 and pneumonia classification
title_full Indirect supervision applied to COVID-19 and pneumonia classification
title_fullStr Indirect supervision applied to COVID-19 and pneumonia classification
title_full_unstemmed Indirect supervision applied to COVID-19 and pneumonia classification
title_short Indirect supervision applied to COVID-19 and pneumonia classification
title_sort indirect supervision applied to covid-19 and pneumonia classification
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8712713/
https://www.ncbi.nlm.nih.gov/pubmed/34977331
http://dx.doi.org/10.1016/j.imu.2021.100835
work_keys_str_mv AT danilovviacheslavv indirectsupervisionappliedtocovid19andpneumoniaclassification
AT proutskialex indirectsupervisionappliedtocovid19andpneumoniaclassification
AT karpovskyalex indirectsupervisionappliedtocovid19andpneumoniaclassification
AT kirpichalexander indirectsupervisionappliedtocovid19andpneumoniaclassification
AT litmanovichdiana indirectsupervisionappliedtocovid19andpneumoniaclassification
AT nefaridzedato indirectsupervisionappliedtocovid19andpneumoniaclassification
AT talalovoleg indirectsupervisionappliedtocovid19andpneumoniaclassification
AT semyonovsemyon indirectsupervisionappliedtocovid19andpneumoniaclassification
AT koniukhovskiivladimir indirectsupervisionappliedtocovid19andpneumoniaclassification
AT shvartcvladimir indirectsupervisionappliedtocovid19andpneumoniaclassification
AT gankinyuriy indirectsupervisionappliedtocovid19andpneumoniaclassification