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Automatic and Accurate Calculation of Rice Seed Setting Rate Based on Image Segmentation and Deep Learning

The rice seed setting rate (RSSR) is an important component in calculating rice yields and a key phenotype for its genetic analysis. Automatic calculations of RSSR through computer vision technology have great significance for rice yield predictions. The basic premise for calculating RSSR is having...

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Autores principales: Guo, Yixin, Li, Shuai, Zhang, Zhanguo, Li, Yang, Hu, Zhenbang, Xin, Dawei, Chen, Qingshan, Wang, Jingguo, Zhu, Rongsheng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8712771/
https://www.ncbi.nlm.nih.gov/pubmed/34970287
http://dx.doi.org/10.3389/fpls.2021.770916
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author Guo, Yixin
Li, Shuai
Zhang, Zhanguo
Li, Yang
Hu, Zhenbang
Xin, Dawei
Chen, Qingshan
Wang, Jingguo
Zhu, Rongsheng
author_facet Guo, Yixin
Li, Shuai
Zhang, Zhanguo
Li, Yang
Hu, Zhenbang
Xin, Dawei
Chen, Qingshan
Wang, Jingguo
Zhu, Rongsheng
author_sort Guo, Yixin
collection PubMed
description The rice seed setting rate (RSSR) is an important component in calculating rice yields and a key phenotype for its genetic analysis. Automatic calculations of RSSR through computer vision technology have great significance for rice yield predictions. The basic premise for calculating RSSR is having an accurate and high throughput identification of rice grains. In this study, we propose a method based on image segmentation and deep learning to automatically identify rice grains and calculate RSSR. By collecting information on the rice panicle, our proposed image automatic segmentation method can detect the full grain and empty grain, after which the RSSR can be calculated by our proposed rice seed setting rate optimization algorithm (RSSROA). Finally, the proposed method was used to predict the RSSR during which process, the average identification accuracy reached 99.43%. This method has therefore been proven as an effective, non-invasive method for high throughput identification and calculation of RSSR. It is also applicable to soybean yields, as well as wheat and other crops with similar characteristics.
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spelling pubmed-87127712021-12-29 Automatic and Accurate Calculation of Rice Seed Setting Rate Based on Image Segmentation and Deep Learning Guo, Yixin Li, Shuai Zhang, Zhanguo Li, Yang Hu, Zhenbang Xin, Dawei Chen, Qingshan Wang, Jingguo Zhu, Rongsheng Front Plant Sci Plant Science The rice seed setting rate (RSSR) is an important component in calculating rice yields and a key phenotype for its genetic analysis. Automatic calculations of RSSR through computer vision technology have great significance for rice yield predictions. The basic premise for calculating RSSR is having an accurate and high throughput identification of rice grains. In this study, we propose a method based on image segmentation and deep learning to automatically identify rice grains and calculate RSSR. By collecting information on the rice panicle, our proposed image automatic segmentation method can detect the full grain and empty grain, after which the RSSR can be calculated by our proposed rice seed setting rate optimization algorithm (RSSROA). Finally, the proposed method was used to predict the RSSR during which process, the average identification accuracy reached 99.43%. This method has therefore been proven as an effective, non-invasive method for high throughput identification and calculation of RSSR. It is also applicable to soybean yields, as well as wheat and other crops with similar characteristics. Frontiers Media S.A. 2021-12-14 /pmc/articles/PMC8712771/ /pubmed/34970287 http://dx.doi.org/10.3389/fpls.2021.770916 Text en Copyright © 2021 Guo, Li, Zhang, Li, Hu, Xin, Chen, Wang and Zhu. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Plant Science
Guo, Yixin
Li, Shuai
Zhang, Zhanguo
Li, Yang
Hu, Zhenbang
Xin, Dawei
Chen, Qingshan
Wang, Jingguo
Zhu, Rongsheng
Automatic and Accurate Calculation of Rice Seed Setting Rate Based on Image Segmentation and Deep Learning
title Automatic and Accurate Calculation of Rice Seed Setting Rate Based on Image Segmentation and Deep Learning
title_full Automatic and Accurate Calculation of Rice Seed Setting Rate Based on Image Segmentation and Deep Learning
title_fullStr Automatic and Accurate Calculation of Rice Seed Setting Rate Based on Image Segmentation and Deep Learning
title_full_unstemmed Automatic and Accurate Calculation of Rice Seed Setting Rate Based on Image Segmentation and Deep Learning
title_short Automatic and Accurate Calculation of Rice Seed Setting Rate Based on Image Segmentation and Deep Learning
title_sort automatic and accurate calculation of rice seed setting rate based on image segmentation and deep learning
topic Plant Science
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8712771/
https://www.ncbi.nlm.nih.gov/pubmed/34970287
http://dx.doi.org/10.3389/fpls.2021.770916
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