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A death, infection, and recovery (DIR) model to forecast the COVID-19 spread

BACKGROUND: The SARS-Cov-2 virus (commonly known as COVID-19) has resulted in substantial casualties in many countries. The first case of COVID-19 was reported in China towards the end of 2019. Cases started to appear in several other countries (including Pakistan) by February 2020. To analyze the s...

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Autores principales: Shams, Fazila, Abbas, Assad, Khan, Wasiq, Khan, Umar Shahbaz, Nawaz, Raheel
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Authors. Published by Elsevier B.V. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8713423/
https://www.ncbi.nlm.nih.gov/pubmed/34977844
http://dx.doi.org/10.1016/j.cmpbup.2021.100047
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author Shams, Fazila
Abbas, Assad
Khan, Wasiq
Khan, Umar Shahbaz
Nawaz, Raheel
author_facet Shams, Fazila
Abbas, Assad
Khan, Wasiq
Khan, Umar Shahbaz
Nawaz, Raheel
author_sort Shams, Fazila
collection PubMed
description BACKGROUND: The SARS-Cov-2 virus (commonly known as COVID-19) has resulted in substantial casualties in many countries. The first case of COVID-19 was reported in China towards the end of 2019. Cases started to appear in several other countries (including Pakistan) by February 2020. To analyze the spreading pattern of the disease, several researchers used the Susceptible-Infectious-Recovered (SIR) model. However, the classical SIR model cannot predict the death rate. OBJECTIVE: In this article, we present a Death-Infection-Recovery (DIR) model to forecast the virus spread over a window of one (minimum) to fourteen (maximum) days. Our model captures the dynamic behavior of the virus and can assist authorities in making decisions on non-pharmaceutical interventions (NPI), like travel restrictions, lockdowns, etc. METHOD: The size of training dataset used was 134 days. The Auto Regressive Integrated Moving Average (ARIMA) model was implemented using XLSTAT (add-in for Microsoft Excel), whereas the SIR and the proposed DIR model was implemented using python programming language. We compared the performance of DIR model with the SIR model and the ARIMA model by computing the Percentage Error and Mean Absolute Percentage Error (MAPE). RESULTS: Experimental results demonstrate that the maximum% error in predicting the number of deaths, infections, and recoveries for a period of fourteen days using the DIR model is only 2.33%, using ARIMA model is 10.03% and using SIR model is 53.07%. CONCLUSION: This percentage of error obtained in forecasting using DIR model is significantly less than the% error of the compared models. Moreover, the MAPE of the DIR model is sufficiently below the two compared models that indicates its effectiveness.
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spelling pubmed-87134232021-12-28 A death, infection, and recovery (DIR) model to forecast the COVID-19 spread Shams, Fazila Abbas, Assad Khan, Wasiq Khan, Umar Shahbaz Nawaz, Raheel Comput Methods Programs Biomed Update Article BACKGROUND: The SARS-Cov-2 virus (commonly known as COVID-19) has resulted in substantial casualties in many countries. The first case of COVID-19 was reported in China towards the end of 2019. Cases started to appear in several other countries (including Pakistan) by February 2020. To analyze the spreading pattern of the disease, several researchers used the Susceptible-Infectious-Recovered (SIR) model. However, the classical SIR model cannot predict the death rate. OBJECTIVE: In this article, we present a Death-Infection-Recovery (DIR) model to forecast the virus spread over a window of one (minimum) to fourteen (maximum) days. Our model captures the dynamic behavior of the virus and can assist authorities in making decisions on non-pharmaceutical interventions (NPI), like travel restrictions, lockdowns, etc. METHOD: The size of training dataset used was 134 days. The Auto Regressive Integrated Moving Average (ARIMA) model was implemented using XLSTAT (add-in for Microsoft Excel), whereas the SIR and the proposed DIR model was implemented using python programming language. We compared the performance of DIR model with the SIR model and the ARIMA model by computing the Percentage Error and Mean Absolute Percentage Error (MAPE). RESULTS: Experimental results demonstrate that the maximum% error in predicting the number of deaths, infections, and recoveries for a period of fourteen days using the DIR model is only 2.33%, using ARIMA model is 10.03% and using SIR model is 53.07%. CONCLUSION: This percentage of error obtained in forecasting using DIR model is significantly less than the% error of the compared models. Moreover, the MAPE of the DIR model is sufficiently below the two compared models that indicates its effectiveness. The Authors. Published by Elsevier B.V. 2022 2021-12-28 /pmc/articles/PMC8713423/ /pubmed/34977844 http://dx.doi.org/10.1016/j.cmpbup.2021.100047 Text en © 2021 The Authors Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Article
Shams, Fazila
Abbas, Assad
Khan, Wasiq
Khan, Umar Shahbaz
Nawaz, Raheel
A death, infection, and recovery (DIR) model to forecast the COVID-19 spread
title A death, infection, and recovery (DIR) model to forecast the COVID-19 spread
title_full A death, infection, and recovery (DIR) model to forecast the COVID-19 spread
title_fullStr A death, infection, and recovery (DIR) model to forecast the COVID-19 spread
title_full_unstemmed A death, infection, and recovery (DIR) model to forecast the COVID-19 spread
title_short A death, infection, and recovery (DIR) model to forecast the COVID-19 spread
title_sort death, infection, and recovery (dir) model to forecast the covid-19 spread
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8713423/
https://www.ncbi.nlm.nih.gov/pubmed/34977844
http://dx.doi.org/10.1016/j.cmpbup.2021.100047
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