Cargando…

An open repository of real-time COVID-19 indicators

The COVID-19 pandemic presented enormous data challenges in the United States. Policy makers, epidemiological modelers, and health researchers all require up-to-date data on the pandemic and relevant public behavior, ideally at fine spatial and temporal resolution. The COVIDcast API is our attempt t...

Descripción completa

Detalles Bibliográficos
Autores principales: Reinhart, Alex, Brooks, Logan, Jahja, Maria, Rumack, Aaron, Tang, Jingjing, Agrawal, Sumit, Al Saeed, Wael, Arnold, Taylor, Basu, Amartya, Bien, Jacob, Cabrera, Ángel A., Chin, Andrew, Chua, Eu Jing, Clark, Brian, Colquhoun, Sarah, DeFries, Nat, Farrow, David C., Forlizzi, Jodi, Grabman, Jed, Gratzl, Samuel, Green, Alden, Haff, George, Han, Robin, Harwood, Kate, Hu, Addison J., Hyde, Raphael, Hyun, Sangwon, Joshi, Ananya, Kim, Jimi, Kuznetsov, Andrew, La Motte-Kerr, Wichada, Lee, Yeon Jin, Lee, Kenneth, Lipton, Zachary C., Liu, Michael X., Mackey, Lester, Mazaitis, Kathryn, McDonald, Daniel J., McGuinness, Phillip, Narasimhan, Balasubramanian, O’Brien, Michael P., Oliveira, Natalia L., Patil, Pratik, Perer, Adam, Politsch, Collin A., Rajanala, Samyak, Rucker, Dawn, Scott, Chris, Shah, Nigam H., Shankar, Vishnu, Sharpnack, James, Shemetov, Dmitry, Simon, Noah, Smith, Benjamin Y., Srivastava, Vishakha, Tan, Shuyi, Tibshirani, Robert, Tuzhilina, Elena, Van Nortwick, Ana Karina, Ventura, Valérie, Wasserman, Larry, Weaver, Benjamin, Weiss, Jeremy C., Whitman, Spencer, Williams, Kristin, Rosenfeld, Roni, Tibshirani, Ryan J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: National Academy of Sciences 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8713778/
https://www.ncbi.nlm.nih.gov/pubmed/34903654
http://dx.doi.org/10.1073/pnas.2111452118
_version_ 1784623809423212544
author Reinhart, Alex
Brooks, Logan
Jahja, Maria
Rumack, Aaron
Tang, Jingjing
Agrawal, Sumit
Al Saeed, Wael
Arnold, Taylor
Basu, Amartya
Bien, Jacob
Cabrera, Ángel A.
Chin, Andrew
Chua, Eu Jing
Clark, Brian
Colquhoun, Sarah
DeFries, Nat
Farrow, David C.
Forlizzi, Jodi
Grabman, Jed
Gratzl, Samuel
Green, Alden
Haff, George
Han, Robin
Harwood, Kate
Hu, Addison J.
Hyde, Raphael
Hyun, Sangwon
Joshi, Ananya
Kim, Jimi
Kuznetsov, Andrew
La Motte-Kerr, Wichada
Lee, Yeon Jin
Lee, Kenneth
Lipton, Zachary C.
Liu, Michael X.
Mackey, Lester
Mazaitis, Kathryn
McDonald, Daniel J.
McGuinness, Phillip
Narasimhan, Balasubramanian
O’Brien, Michael P.
Oliveira, Natalia L.
Patil, Pratik
Perer, Adam
Politsch, Collin A.
Rajanala, Samyak
Rucker, Dawn
Scott, Chris
Shah, Nigam H.
Shankar, Vishnu
Sharpnack, James
Shemetov, Dmitry
Simon, Noah
Smith, Benjamin Y.
Srivastava, Vishakha
Tan, Shuyi
Tibshirani, Robert
Tuzhilina, Elena
Van Nortwick, Ana Karina
Ventura, Valérie
Wasserman, Larry
Weaver, Benjamin
Weiss, Jeremy C.
Whitman, Spencer
Williams, Kristin
Rosenfeld, Roni
Tibshirani, Ryan J.
author_facet Reinhart, Alex
Brooks, Logan
Jahja, Maria
Rumack, Aaron
Tang, Jingjing
Agrawal, Sumit
Al Saeed, Wael
Arnold, Taylor
Basu, Amartya
Bien, Jacob
Cabrera, Ángel A.
Chin, Andrew
Chua, Eu Jing
Clark, Brian
Colquhoun, Sarah
DeFries, Nat
Farrow, David C.
Forlizzi, Jodi
Grabman, Jed
Gratzl, Samuel
Green, Alden
Haff, George
Han, Robin
Harwood, Kate
Hu, Addison J.
Hyde, Raphael
Hyun, Sangwon
Joshi, Ananya
Kim, Jimi
Kuznetsov, Andrew
La Motte-Kerr, Wichada
Lee, Yeon Jin
Lee, Kenneth
Lipton, Zachary C.
Liu, Michael X.
Mackey, Lester
Mazaitis, Kathryn
McDonald, Daniel J.
McGuinness, Phillip
Narasimhan, Balasubramanian
O’Brien, Michael P.
Oliveira, Natalia L.
Patil, Pratik
Perer, Adam
Politsch, Collin A.
Rajanala, Samyak
Rucker, Dawn
Scott, Chris
Shah, Nigam H.
Shankar, Vishnu
Sharpnack, James
Shemetov, Dmitry
Simon, Noah
Smith, Benjamin Y.
Srivastava, Vishakha
Tan, Shuyi
Tibshirani, Robert
Tuzhilina, Elena
Van Nortwick, Ana Karina
Ventura, Valérie
Wasserman, Larry
Weaver, Benjamin
Weiss, Jeremy C.
Whitman, Spencer
Williams, Kristin
Rosenfeld, Roni
Tibshirani, Ryan J.
author_sort Reinhart, Alex
collection PubMed
description The COVID-19 pandemic presented enormous data challenges in the United States. Policy makers, epidemiological modelers, and health researchers all require up-to-date data on the pandemic and relevant public behavior, ideally at fine spatial and temporal resolution. The COVIDcast API is our attempt to fill this need: Operational since April 2020, it provides open access to both traditional public health surveillance signals (cases, deaths, and hospitalizations) and many auxiliary indicators of COVID-19 activity, such as signals extracted from deidentified medical claims data, massive online surveys, cell phone mobility data, and internet search trends. These are available at a fine geographic resolution (mostly at the county level) and are updated daily. The COVIDcast API also tracks all revisions to historical data, allowing modelers to account for the frequent revisions and backfill that are common for many public health data sources. All of the data are available in a common format through the API and accompanying R and Python software packages. This paper describes the data sources and signals, and provides examples demonstrating that the auxiliary signals in the COVIDcast API present information relevant to tracking COVID activity, augmenting traditional public health reporting and empowering research and decision-making.
format Online
Article
Text
id pubmed-8713778
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher National Academy of Sciences
record_format MEDLINE/PubMed
spelling pubmed-87137782022-01-21 An open repository of real-time COVID-19 indicators Reinhart, Alex Brooks, Logan Jahja, Maria Rumack, Aaron Tang, Jingjing Agrawal, Sumit Al Saeed, Wael Arnold, Taylor Basu, Amartya Bien, Jacob Cabrera, Ángel A. Chin, Andrew Chua, Eu Jing Clark, Brian Colquhoun, Sarah DeFries, Nat Farrow, David C. Forlizzi, Jodi Grabman, Jed Gratzl, Samuel Green, Alden Haff, George Han, Robin Harwood, Kate Hu, Addison J. Hyde, Raphael Hyun, Sangwon Joshi, Ananya Kim, Jimi Kuznetsov, Andrew La Motte-Kerr, Wichada Lee, Yeon Jin Lee, Kenneth Lipton, Zachary C. Liu, Michael X. Mackey, Lester Mazaitis, Kathryn McDonald, Daniel J. McGuinness, Phillip Narasimhan, Balasubramanian O’Brien, Michael P. Oliveira, Natalia L. Patil, Pratik Perer, Adam Politsch, Collin A. Rajanala, Samyak Rucker, Dawn Scott, Chris Shah, Nigam H. Shankar, Vishnu Sharpnack, James Shemetov, Dmitry Simon, Noah Smith, Benjamin Y. Srivastava, Vishakha Tan, Shuyi Tibshirani, Robert Tuzhilina, Elena Van Nortwick, Ana Karina Ventura, Valérie Wasserman, Larry Weaver, Benjamin Weiss, Jeremy C. Whitman, Spencer Williams, Kristin Rosenfeld, Roni Tibshirani, Ryan J. Proc Natl Acad Sci U S A Biological Sciences The COVID-19 pandemic presented enormous data challenges in the United States. Policy makers, epidemiological modelers, and health researchers all require up-to-date data on the pandemic and relevant public behavior, ideally at fine spatial and temporal resolution. The COVIDcast API is our attempt to fill this need: Operational since April 2020, it provides open access to both traditional public health surveillance signals (cases, deaths, and hospitalizations) and many auxiliary indicators of COVID-19 activity, such as signals extracted from deidentified medical claims data, massive online surveys, cell phone mobility data, and internet search trends. These are available at a fine geographic resolution (mostly at the county level) and are updated daily. The COVIDcast API also tracks all revisions to historical data, allowing modelers to account for the frequent revisions and backfill that are common for many public health data sources. All of the data are available in a common format through the API and accompanying R and Python software packages. This paper describes the data sources and signals, and provides examples demonstrating that the auxiliary signals in the COVIDcast API present information relevant to tracking COVID activity, augmenting traditional public health reporting and empowering research and decision-making. National Academy of Sciences 2021-12-13 2021-12-21 /pmc/articles/PMC8713778/ /pubmed/34903654 http://dx.doi.org/10.1073/pnas.2111452118 Text en Copyright © 2021 the Author(s). Published by PNAS. https://creativecommons.org/licenses/by/4.0/This open access article is distributed under Creative Commons Attribution License 4.0 (CC BY) (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Biological Sciences
Reinhart, Alex
Brooks, Logan
Jahja, Maria
Rumack, Aaron
Tang, Jingjing
Agrawal, Sumit
Al Saeed, Wael
Arnold, Taylor
Basu, Amartya
Bien, Jacob
Cabrera, Ángel A.
Chin, Andrew
Chua, Eu Jing
Clark, Brian
Colquhoun, Sarah
DeFries, Nat
Farrow, David C.
Forlizzi, Jodi
Grabman, Jed
Gratzl, Samuel
Green, Alden
Haff, George
Han, Robin
Harwood, Kate
Hu, Addison J.
Hyde, Raphael
Hyun, Sangwon
Joshi, Ananya
Kim, Jimi
Kuznetsov, Andrew
La Motte-Kerr, Wichada
Lee, Yeon Jin
Lee, Kenneth
Lipton, Zachary C.
Liu, Michael X.
Mackey, Lester
Mazaitis, Kathryn
McDonald, Daniel J.
McGuinness, Phillip
Narasimhan, Balasubramanian
O’Brien, Michael P.
Oliveira, Natalia L.
Patil, Pratik
Perer, Adam
Politsch, Collin A.
Rajanala, Samyak
Rucker, Dawn
Scott, Chris
Shah, Nigam H.
Shankar, Vishnu
Sharpnack, James
Shemetov, Dmitry
Simon, Noah
Smith, Benjamin Y.
Srivastava, Vishakha
Tan, Shuyi
Tibshirani, Robert
Tuzhilina, Elena
Van Nortwick, Ana Karina
Ventura, Valérie
Wasserman, Larry
Weaver, Benjamin
Weiss, Jeremy C.
Whitman, Spencer
Williams, Kristin
Rosenfeld, Roni
Tibshirani, Ryan J.
An open repository of real-time COVID-19 indicators
title An open repository of real-time COVID-19 indicators
title_full An open repository of real-time COVID-19 indicators
title_fullStr An open repository of real-time COVID-19 indicators
title_full_unstemmed An open repository of real-time COVID-19 indicators
title_short An open repository of real-time COVID-19 indicators
title_sort open repository of real-time covid-19 indicators
topic Biological Sciences
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8713778/
https://www.ncbi.nlm.nih.gov/pubmed/34903654
http://dx.doi.org/10.1073/pnas.2111452118
work_keys_str_mv AT reinhartalex anopenrepositoryofrealtimecovid19indicators
AT brookslogan anopenrepositoryofrealtimecovid19indicators
AT jahjamaria anopenrepositoryofrealtimecovid19indicators
AT rumackaaron anopenrepositoryofrealtimecovid19indicators
AT tangjingjing anopenrepositoryofrealtimecovid19indicators
AT agrawalsumit anopenrepositoryofrealtimecovid19indicators
AT alsaeedwael anopenrepositoryofrealtimecovid19indicators
AT arnoldtaylor anopenrepositoryofrealtimecovid19indicators
AT basuamartya anopenrepositoryofrealtimecovid19indicators
AT bienjacob anopenrepositoryofrealtimecovid19indicators
AT cabreraangela anopenrepositoryofrealtimecovid19indicators
AT chinandrew anopenrepositoryofrealtimecovid19indicators
AT chuaeujing anopenrepositoryofrealtimecovid19indicators
AT clarkbrian anopenrepositoryofrealtimecovid19indicators
AT colquhounsarah anopenrepositoryofrealtimecovid19indicators
AT defriesnat anopenrepositoryofrealtimecovid19indicators
AT farrowdavidc anopenrepositoryofrealtimecovid19indicators
AT forlizzijodi anopenrepositoryofrealtimecovid19indicators
AT grabmanjed anopenrepositoryofrealtimecovid19indicators
AT gratzlsamuel anopenrepositoryofrealtimecovid19indicators
AT greenalden anopenrepositoryofrealtimecovid19indicators
AT haffgeorge anopenrepositoryofrealtimecovid19indicators
AT hanrobin anopenrepositoryofrealtimecovid19indicators
AT harwoodkate anopenrepositoryofrealtimecovid19indicators
AT huaddisonj anopenrepositoryofrealtimecovid19indicators
AT hyderaphael anopenrepositoryofrealtimecovid19indicators
AT hyunsangwon anopenrepositoryofrealtimecovid19indicators
AT joshiananya anopenrepositoryofrealtimecovid19indicators
AT kimjimi anopenrepositoryofrealtimecovid19indicators
AT kuznetsovandrew anopenrepositoryofrealtimecovid19indicators
AT lamottekerrwichada anopenrepositoryofrealtimecovid19indicators
AT leeyeonjin anopenrepositoryofrealtimecovid19indicators
AT leekenneth anopenrepositoryofrealtimecovid19indicators
AT liptonzacharyc anopenrepositoryofrealtimecovid19indicators
AT liumichaelx anopenrepositoryofrealtimecovid19indicators
AT mackeylester anopenrepositoryofrealtimecovid19indicators
AT mazaitiskathryn anopenrepositoryofrealtimecovid19indicators
AT mcdonalddanielj anopenrepositoryofrealtimecovid19indicators
AT mcguinnessphillip anopenrepositoryofrealtimecovid19indicators
AT narasimhanbalasubramanian anopenrepositoryofrealtimecovid19indicators
AT obrienmichaelp anopenrepositoryofrealtimecovid19indicators
AT oliveiranatalial anopenrepositoryofrealtimecovid19indicators
AT patilpratik anopenrepositoryofrealtimecovid19indicators
AT pereradam anopenrepositoryofrealtimecovid19indicators
AT politschcollina anopenrepositoryofrealtimecovid19indicators
AT rajanalasamyak anopenrepositoryofrealtimecovid19indicators
AT ruckerdawn anopenrepositoryofrealtimecovid19indicators
AT scottchris anopenrepositoryofrealtimecovid19indicators
AT shahnigamh anopenrepositoryofrealtimecovid19indicators
AT shankarvishnu anopenrepositoryofrealtimecovid19indicators
AT sharpnackjames anopenrepositoryofrealtimecovid19indicators
AT shemetovdmitry anopenrepositoryofrealtimecovid19indicators
AT simonnoah anopenrepositoryofrealtimecovid19indicators
AT smithbenjaminy anopenrepositoryofrealtimecovid19indicators
AT srivastavavishakha anopenrepositoryofrealtimecovid19indicators
AT tanshuyi anopenrepositoryofrealtimecovid19indicators
AT tibshiranirobert anopenrepositoryofrealtimecovid19indicators
AT tuzhilinaelena anopenrepositoryofrealtimecovid19indicators
AT vannortwickanakarina anopenrepositoryofrealtimecovid19indicators
AT venturavalerie anopenrepositoryofrealtimecovid19indicators
AT wassermanlarry anopenrepositoryofrealtimecovid19indicators
AT weaverbenjamin anopenrepositoryofrealtimecovid19indicators
AT weissjeremyc anopenrepositoryofrealtimecovid19indicators
AT whitmanspencer anopenrepositoryofrealtimecovid19indicators
AT williamskristin anopenrepositoryofrealtimecovid19indicators
AT rosenfeldroni anopenrepositoryofrealtimecovid19indicators
AT tibshiraniryanj anopenrepositoryofrealtimecovid19indicators
AT reinhartalex openrepositoryofrealtimecovid19indicators
AT brookslogan openrepositoryofrealtimecovid19indicators
AT jahjamaria openrepositoryofrealtimecovid19indicators
AT rumackaaron openrepositoryofrealtimecovid19indicators
AT tangjingjing openrepositoryofrealtimecovid19indicators
AT agrawalsumit openrepositoryofrealtimecovid19indicators
AT alsaeedwael openrepositoryofrealtimecovid19indicators
AT arnoldtaylor openrepositoryofrealtimecovid19indicators
AT basuamartya openrepositoryofrealtimecovid19indicators
AT bienjacob openrepositoryofrealtimecovid19indicators
AT cabreraangela openrepositoryofrealtimecovid19indicators
AT chinandrew openrepositoryofrealtimecovid19indicators
AT chuaeujing openrepositoryofrealtimecovid19indicators
AT clarkbrian openrepositoryofrealtimecovid19indicators
AT colquhounsarah openrepositoryofrealtimecovid19indicators
AT defriesnat openrepositoryofrealtimecovid19indicators
AT farrowdavidc openrepositoryofrealtimecovid19indicators
AT forlizzijodi openrepositoryofrealtimecovid19indicators
AT grabmanjed openrepositoryofrealtimecovid19indicators
AT gratzlsamuel openrepositoryofrealtimecovid19indicators
AT greenalden openrepositoryofrealtimecovid19indicators
AT haffgeorge openrepositoryofrealtimecovid19indicators
AT hanrobin openrepositoryofrealtimecovid19indicators
AT harwoodkate openrepositoryofrealtimecovid19indicators
AT huaddisonj openrepositoryofrealtimecovid19indicators
AT hyderaphael openrepositoryofrealtimecovid19indicators
AT hyunsangwon openrepositoryofrealtimecovid19indicators
AT joshiananya openrepositoryofrealtimecovid19indicators
AT kimjimi openrepositoryofrealtimecovid19indicators
AT kuznetsovandrew openrepositoryofrealtimecovid19indicators
AT lamottekerrwichada openrepositoryofrealtimecovid19indicators
AT leeyeonjin openrepositoryofrealtimecovid19indicators
AT leekenneth openrepositoryofrealtimecovid19indicators
AT liptonzacharyc openrepositoryofrealtimecovid19indicators
AT liumichaelx openrepositoryofrealtimecovid19indicators
AT mackeylester openrepositoryofrealtimecovid19indicators
AT mazaitiskathryn openrepositoryofrealtimecovid19indicators
AT mcdonalddanielj openrepositoryofrealtimecovid19indicators
AT mcguinnessphillip openrepositoryofrealtimecovid19indicators
AT narasimhanbalasubramanian openrepositoryofrealtimecovid19indicators
AT obrienmichaelp openrepositoryofrealtimecovid19indicators
AT oliveiranatalial openrepositoryofrealtimecovid19indicators
AT patilpratik openrepositoryofrealtimecovid19indicators
AT pereradam openrepositoryofrealtimecovid19indicators
AT politschcollina openrepositoryofrealtimecovid19indicators
AT rajanalasamyak openrepositoryofrealtimecovid19indicators
AT ruckerdawn openrepositoryofrealtimecovid19indicators
AT scottchris openrepositoryofrealtimecovid19indicators
AT shahnigamh openrepositoryofrealtimecovid19indicators
AT shankarvishnu openrepositoryofrealtimecovid19indicators
AT sharpnackjames openrepositoryofrealtimecovid19indicators
AT shemetovdmitry openrepositoryofrealtimecovid19indicators
AT simonnoah openrepositoryofrealtimecovid19indicators
AT smithbenjaminy openrepositoryofrealtimecovid19indicators
AT srivastavavishakha openrepositoryofrealtimecovid19indicators
AT tanshuyi openrepositoryofrealtimecovid19indicators
AT tibshiranirobert openrepositoryofrealtimecovid19indicators
AT tuzhilinaelena openrepositoryofrealtimecovid19indicators
AT vannortwickanakarina openrepositoryofrealtimecovid19indicators
AT venturavalerie openrepositoryofrealtimecovid19indicators
AT wassermanlarry openrepositoryofrealtimecovid19indicators
AT weaverbenjamin openrepositoryofrealtimecovid19indicators
AT weissjeremyc openrepositoryofrealtimecovid19indicators
AT whitmanspencer openrepositoryofrealtimecovid19indicators
AT williamskristin openrepositoryofrealtimecovid19indicators
AT rosenfeldroni openrepositoryofrealtimecovid19indicators
AT tibshiraniryanj openrepositoryofrealtimecovid19indicators