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Can auxiliary indicators improve COVID-19 forecasting and hotspot prediction?

Short-term forecasts of traditional streams from public health reporting (such as cases, hospitalizations, and deaths) are a key input to public health decision-making during a pandemic. Since early 2020, our research group has worked with data partners to collect, curate, and make publicly availabl...

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Autores principales: McDonald, Daniel J., Bien, Jacob, Green, Alden, Hu, Addison J., DeFries, Nat, Hyun, Sangwon, Oliveira, Natalia L., Sharpnack, James, Tang, Jingjing, Tibshirani, Robert, Ventura, Valérie, Wasserman, Larry, Tibshirani, Ryan J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: National Academy of Sciences 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8713796/
https://www.ncbi.nlm.nih.gov/pubmed/34903655
http://dx.doi.org/10.1073/pnas.2111453118
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author McDonald, Daniel J.
Bien, Jacob
Green, Alden
Hu, Addison J.
DeFries, Nat
Hyun, Sangwon
Oliveira, Natalia L.
Sharpnack, James
Tang, Jingjing
Tibshirani, Robert
Ventura, Valérie
Wasserman, Larry
Tibshirani, Ryan J.
author_facet McDonald, Daniel J.
Bien, Jacob
Green, Alden
Hu, Addison J.
DeFries, Nat
Hyun, Sangwon
Oliveira, Natalia L.
Sharpnack, James
Tang, Jingjing
Tibshirani, Robert
Ventura, Valérie
Wasserman, Larry
Tibshirani, Ryan J.
author_sort McDonald, Daniel J.
collection PubMed
description Short-term forecasts of traditional streams from public health reporting (such as cases, hospitalizations, and deaths) are a key input to public health decision-making during a pandemic. Since early 2020, our research group has worked with data partners to collect, curate, and make publicly available numerous real-time COVID-19 indicators, providing multiple views of pandemic activity in the United States. This paper studies the utility of five such indicators—derived from deidentified medical insurance claims, self-reported symptoms from online surveys, and COVID-related Google search activity—from a forecasting perspective. For each indicator, we ask whether its inclusion in an autoregressive (AR) model leads to improved predictive accuracy relative to the same model excluding it. Such an AR model, without external features, is already competitive with many top COVID-19 forecasting models in use today. Our analysis reveals that 1) inclusion of each of these five indicators improves on the overall predictive accuracy of the AR model; 2) predictive gains are in general most pronounced during times in which COVID cases are trending in “flat” or “down” directions; and 3) one indicator, based on Google searches, seems to be particularly helpful during “up” trends.
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spelling pubmed-87137962022-01-21 Can auxiliary indicators improve COVID-19 forecasting and hotspot prediction? McDonald, Daniel J. Bien, Jacob Green, Alden Hu, Addison J. DeFries, Nat Hyun, Sangwon Oliveira, Natalia L. Sharpnack, James Tang, Jingjing Tibshirani, Robert Ventura, Valérie Wasserman, Larry Tibshirani, Ryan J. Proc Natl Acad Sci U S A Physical Sciences Short-term forecasts of traditional streams from public health reporting (such as cases, hospitalizations, and deaths) are a key input to public health decision-making during a pandemic. Since early 2020, our research group has worked with data partners to collect, curate, and make publicly available numerous real-time COVID-19 indicators, providing multiple views of pandemic activity in the United States. This paper studies the utility of five such indicators—derived from deidentified medical insurance claims, self-reported symptoms from online surveys, and COVID-related Google search activity—from a forecasting perspective. For each indicator, we ask whether its inclusion in an autoregressive (AR) model leads to improved predictive accuracy relative to the same model excluding it. Such an AR model, without external features, is already competitive with many top COVID-19 forecasting models in use today. Our analysis reveals that 1) inclusion of each of these five indicators improves on the overall predictive accuracy of the AR model; 2) predictive gains are in general most pronounced during times in which COVID cases are trending in “flat” or “down” directions; and 3) one indicator, based on Google searches, seems to be particularly helpful during “up” trends. National Academy of Sciences 2021-12-13 2021-12-21 /pmc/articles/PMC8713796/ /pubmed/34903655 http://dx.doi.org/10.1073/pnas.2111453118 Text en Copyright © 2021 the Author(s). Published by PNAS. https://creativecommons.org/licenses/by/4.0/This open access article is distributed under Creative Commons Attribution License 4.0 (CC BY) (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Physical Sciences
McDonald, Daniel J.
Bien, Jacob
Green, Alden
Hu, Addison J.
DeFries, Nat
Hyun, Sangwon
Oliveira, Natalia L.
Sharpnack, James
Tang, Jingjing
Tibshirani, Robert
Ventura, Valérie
Wasserman, Larry
Tibshirani, Ryan J.
Can auxiliary indicators improve COVID-19 forecasting and hotspot prediction?
title Can auxiliary indicators improve COVID-19 forecasting and hotspot prediction?
title_full Can auxiliary indicators improve COVID-19 forecasting and hotspot prediction?
title_fullStr Can auxiliary indicators improve COVID-19 forecasting and hotspot prediction?
title_full_unstemmed Can auxiliary indicators improve COVID-19 forecasting and hotspot prediction?
title_short Can auxiliary indicators improve COVID-19 forecasting and hotspot prediction?
title_sort can auxiliary indicators improve covid-19 forecasting and hotspot prediction?
topic Physical Sciences
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8713796/
https://www.ncbi.nlm.nih.gov/pubmed/34903655
http://dx.doi.org/10.1073/pnas.2111453118
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