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Ensemble learning to predict opioid-related overdose using statewide prescription drug monitoring program and hospital discharge data in the state of Tennessee
OBJECTIVE: To develop and validate algorithms for predicting 30-day fatal and nonfatal opioid-related overdose using statewide data sources including prescription drug monitoring program data, Hospital Discharge Data System data, and Tennessee (TN) vital records. Current overdose prevention efforts...
Autores principales: | , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8714265/ https://www.ncbi.nlm.nih.gov/pubmed/34665246 http://dx.doi.org/10.1093/jamia/ocab218 |
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author | Ripperger, Michael Lotspeich, Sarah C Wilimitis, Drew Fry, Carrie E Roberts, Allison Lenert, Matthew Cherry, Charlotte Latham, Sanura Robinson, Katelyn Chen, Qingxia McPheeters, Melissa L Tyndall, Ben Walsh, Colin G |
author_facet | Ripperger, Michael Lotspeich, Sarah C Wilimitis, Drew Fry, Carrie E Roberts, Allison Lenert, Matthew Cherry, Charlotte Latham, Sanura Robinson, Katelyn Chen, Qingxia McPheeters, Melissa L Tyndall, Ben Walsh, Colin G |
author_sort | Ripperger, Michael |
collection | PubMed |
description | OBJECTIVE: To develop and validate algorithms for predicting 30-day fatal and nonfatal opioid-related overdose using statewide data sources including prescription drug monitoring program data, Hospital Discharge Data System data, and Tennessee (TN) vital records. Current overdose prevention efforts in TN rely on descriptive and retrospective analyses without prognostication. MATERIALS AND METHODS: Study data included 3 041 668 TN patients with 71 479 191 controlled substance prescriptions from 2012 to 2017. Statewide data and socioeconomic indicators were used to train, ensemble, and calibrate 10 nonparametric “weak learner” models. Validation was performed using area under the receiver operating curve (AUROC), area under the precision recall curve, risk concentration, and Spiegelhalter z-test statistic. RESULTS: Within 30 days, 2574 fatal overdoses occurred after 4912 prescriptions (0.0069%) and 8455 nonfatal overdoses occurred after 19 460 prescriptions (0.027%). Discrimination and calibration improved after ensembling (AUROC: 0.79–0.83; Spiegelhalter P value: 0–.12). Risk concentration captured 47–52% of cases in the top quantiles of predicted probabilities. DISCUSSION: Partitioning and ensembling enabled all study data to be used given computational limits and helped mediate case imbalance. Predicting risk at the prescription level can aggregate risk to the patient, provider, pharmacy, county, and regional levels. Implementing these models into Tennessee Department of Health systems might enable more granular risk quantification. Prospective validation with more recent data is needed. CONCLUSION: Predicting opioid-related overdose risk at statewide scales remains difficult and models like these, which required a partnership between an academic institution and state health agency to develop, may complement traditional epidemiological methods of risk identification and inform public health decisions. |
format | Online Article Text |
id | pubmed-8714265 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-87142652022-01-04 Ensemble learning to predict opioid-related overdose using statewide prescription drug monitoring program and hospital discharge data in the state of Tennessee Ripperger, Michael Lotspeich, Sarah C Wilimitis, Drew Fry, Carrie E Roberts, Allison Lenert, Matthew Cherry, Charlotte Latham, Sanura Robinson, Katelyn Chen, Qingxia McPheeters, Melissa L Tyndall, Ben Walsh, Colin G J Am Med Inform Assoc Research and Applications OBJECTIVE: To develop and validate algorithms for predicting 30-day fatal and nonfatal opioid-related overdose using statewide data sources including prescription drug monitoring program data, Hospital Discharge Data System data, and Tennessee (TN) vital records. Current overdose prevention efforts in TN rely on descriptive and retrospective analyses without prognostication. MATERIALS AND METHODS: Study data included 3 041 668 TN patients with 71 479 191 controlled substance prescriptions from 2012 to 2017. Statewide data and socioeconomic indicators were used to train, ensemble, and calibrate 10 nonparametric “weak learner” models. Validation was performed using area under the receiver operating curve (AUROC), area under the precision recall curve, risk concentration, and Spiegelhalter z-test statistic. RESULTS: Within 30 days, 2574 fatal overdoses occurred after 4912 prescriptions (0.0069%) and 8455 nonfatal overdoses occurred after 19 460 prescriptions (0.027%). Discrimination and calibration improved after ensembling (AUROC: 0.79–0.83; Spiegelhalter P value: 0–.12). Risk concentration captured 47–52% of cases in the top quantiles of predicted probabilities. DISCUSSION: Partitioning and ensembling enabled all study data to be used given computational limits and helped mediate case imbalance. Predicting risk at the prescription level can aggregate risk to the patient, provider, pharmacy, county, and regional levels. Implementing these models into Tennessee Department of Health systems might enable more granular risk quantification. Prospective validation with more recent data is needed. CONCLUSION: Predicting opioid-related overdose risk at statewide scales remains difficult and models like these, which required a partnership between an academic institution and state health agency to develop, may complement traditional epidemiological methods of risk identification and inform public health decisions. Oxford University Press 2021-10-19 /pmc/articles/PMC8714265/ /pubmed/34665246 http://dx.doi.org/10.1093/jamia/ocab218 Text en © The Author(s) 2021. Published by Oxford University Press on behalf of the American Medical Informatics Association. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs licence (https://creativecommons.org/licenses/by-nc-nd/4.0/), which permits non-commercial reproduction and distribution of the work, in any medium, provided the original work is not altered or transformed in any way, and that the work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | Research and Applications Ripperger, Michael Lotspeich, Sarah C Wilimitis, Drew Fry, Carrie E Roberts, Allison Lenert, Matthew Cherry, Charlotte Latham, Sanura Robinson, Katelyn Chen, Qingxia McPheeters, Melissa L Tyndall, Ben Walsh, Colin G Ensemble learning to predict opioid-related overdose using statewide prescription drug monitoring program and hospital discharge data in the state of Tennessee |
title | Ensemble learning to predict opioid-related overdose using statewide prescription drug monitoring program and hospital discharge data in the state of Tennessee |
title_full | Ensemble learning to predict opioid-related overdose using statewide prescription drug monitoring program and hospital discharge data in the state of Tennessee |
title_fullStr | Ensemble learning to predict opioid-related overdose using statewide prescription drug monitoring program and hospital discharge data in the state of Tennessee |
title_full_unstemmed | Ensemble learning to predict opioid-related overdose using statewide prescription drug monitoring program and hospital discharge data in the state of Tennessee |
title_short | Ensemble learning to predict opioid-related overdose using statewide prescription drug monitoring program and hospital discharge data in the state of Tennessee |
title_sort | ensemble learning to predict opioid-related overdose using statewide prescription drug monitoring program and hospital discharge data in the state of tennessee |
topic | Research and Applications |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8714265/ https://www.ncbi.nlm.nih.gov/pubmed/34665246 http://dx.doi.org/10.1093/jamia/ocab218 |
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