Cargando…

Bifurcated Topological Optimization for IVIM

In this work, we shed light on the issue of estimating Intravoxel Incoherent Motion (IVIM) for diffusion and perfusion estimation by characterizing the objective function using simplicial homology tools. We provide a robust solution via topological optimization of this model so that the estimates ar...

Descripción completa

Detalles Bibliográficos
Autores principales: Fadnavis, Shreyas, Endres, Stefan, Wen, Qiuting, Wu, Yu-Chien, Cheng, Hu, Koudoro, Serge, Rane, Swati, Rokem, Ariel, Garyfallidis, Eleftherios
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8714828/
https://www.ncbi.nlm.nih.gov/pubmed/34975382
http://dx.doi.org/10.3389/fnins.2021.779025
_version_ 1784624013269532672
author Fadnavis, Shreyas
Endres, Stefan
Wen, Qiuting
Wu, Yu-Chien
Cheng, Hu
Koudoro, Serge
Rane, Swati
Rokem, Ariel
Garyfallidis, Eleftherios
author_facet Fadnavis, Shreyas
Endres, Stefan
Wen, Qiuting
Wu, Yu-Chien
Cheng, Hu
Koudoro, Serge
Rane, Swati
Rokem, Ariel
Garyfallidis, Eleftherios
author_sort Fadnavis, Shreyas
collection PubMed
description In this work, we shed light on the issue of estimating Intravoxel Incoherent Motion (IVIM) for diffusion and perfusion estimation by characterizing the objective function using simplicial homology tools. We provide a robust solution via topological optimization of this model so that the estimates are more reliable and accurate. Estimating the tissue microstructure from diffusion MRI is in itself an ill-posed and a non-linear inverse problem. Using variable projection functional (VarPro) to fit the standard bi-exponential IVIM model we perform the optimization using simplicial homology based global optimization to better understand the topology of objective function surface. We theoretically show how the proposed methodology can recover the model parameters more accurately and consistently by casting it in a reduced subspace given by VarPro. Additionally we demonstrate that the IVIM model parameters cannot be accurately reconstructed using conventional numerical optimization methods due to the presence of infinite solutions in subspaces. The proposed method helps uncover multiple global minima by analyzing the local geometry of the model enabling the generation of reliable estimates of model parameters.
format Online
Article
Text
id pubmed-8714828
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-87148282021-12-30 Bifurcated Topological Optimization for IVIM Fadnavis, Shreyas Endres, Stefan Wen, Qiuting Wu, Yu-Chien Cheng, Hu Koudoro, Serge Rane, Swati Rokem, Ariel Garyfallidis, Eleftherios Front Neurosci Neuroscience In this work, we shed light on the issue of estimating Intravoxel Incoherent Motion (IVIM) for diffusion and perfusion estimation by characterizing the objective function using simplicial homology tools. We provide a robust solution via topological optimization of this model so that the estimates are more reliable and accurate. Estimating the tissue microstructure from diffusion MRI is in itself an ill-posed and a non-linear inverse problem. Using variable projection functional (VarPro) to fit the standard bi-exponential IVIM model we perform the optimization using simplicial homology based global optimization to better understand the topology of objective function surface. We theoretically show how the proposed methodology can recover the model parameters more accurately and consistently by casting it in a reduced subspace given by VarPro. Additionally we demonstrate that the IVIM model parameters cannot be accurately reconstructed using conventional numerical optimization methods due to the presence of infinite solutions in subspaces. The proposed method helps uncover multiple global minima by analyzing the local geometry of the model enabling the generation of reliable estimates of model parameters. Frontiers Media S.A. 2021-12-15 /pmc/articles/PMC8714828/ /pubmed/34975382 http://dx.doi.org/10.3389/fnins.2021.779025 Text en Copyright © 2021 Fadnavis, Endres, Wen, Wu, Cheng, Koudoro, Rane, Rokem and Garyfallidis. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Neuroscience
Fadnavis, Shreyas
Endres, Stefan
Wen, Qiuting
Wu, Yu-Chien
Cheng, Hu
Koudoro, Serge
Rane, Swati
Rokem, Ariel
Garyfallidis, Eleftherios
Bifurcated Topological Optimization for IVIM
title Bifurcated Topological Optimization for IVIM
title_full Bifurcated Topological Optimization for IVIM
title_fullStr Bifurcated Topological Optimization for IVIM
title_full_unstemmed Bifurcated Topological Optimization for IVIM
title_short Bifurcated Topological Optimization for IVIM
title_sort bifurcated topological optimization for ivim
topic Neuroscience
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8714828/
https://www.ncbi.nlm.nih.gov/pubmed/34975382
http://dx.doi.org/10.3389/fnins.2021.779025
work_keys_str_mv AT fadnavisshreyas bifurcatedtopologicaloptimizationforivim
AT endresstefan bifurcatedtopologicaloptimizationforivim
AT wenqiuting bifurcatedtopologicaloptimizationforivim
AT wuyuchien bifurcatedtopologicaloptimizationforivim
AT chenghu bifurcatedtopologicaloptimizationforivim
AT koudoroserge bifurcatedtopologicaloptimizationforivim
AT raneswati bifurcatedtopologicaloptimizationforivim
AT rokemariel bifurcatedtopologicaloptimizationforivim
AT garyfallidiseleftherios bifurcatedtopologicaloptimizationforivim