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Complete Genome Sequence of the Type Strain Tepidimonas taiwanensis LMG 22826(T), a Thermophilic Alkaline Protease and Polyhydroxyalkanoate Producer

Tepidimonas taiwanensis is a moderately thermophilic, Gram-negative, rod-shaped, chemoorganoheterotrophic, motile bacterium. The alkaline protease producing type strain T. taiwanensis LMG 22826(T) was recently reported to also be a promising producer of polyhydroxyalkanoates (PHAs)—renewable and bio...

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Autores principales: Hermankova, Kristyna, Kourilova, Xenie, Pernicova, Iva, Bezdicek, Matej, Lengerova, Martina, Obruca, Stanislav, Sedlar, Karel
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8715522/
https://www.ncbi.nlm.nih.gov/pubmed/34908127
http://dx.doi.org/10.1093/gbe/evab280
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author Hermankova, Kristyna
Kourilova, Xenie
Pernicova, Iva
Bezdicek, Matej
Lengerova, Martina
Obruca, Stanislav
Sedlar, Karel
author_facet Hermankova, Kristyna
Kourilova, Xenie
Pernicova, Iva
Bezdicek, Matej
Lengerova, Martina
Obruca, Stanislav
Sedlar, Karel
author_sort Hermankova, Kristyna
collection PubMed
description Tepidimonas taiwanensis is a moderately thermophilic, Gram-negative, rod-shaped, chemoorganoheterotrophic, motile bacterium. The alkaline protease producing type strain T. taiwanensis LMG 22826(T) was recently reported to also be a promising producer of polyhydroxyalkanoates (PHAs)—renewable and biodegradable polymers representing an alternative to conventional plastics. Here, we present its first complete genome sequence which is also the first complete genome sequence of the whole species. The genome consists of a single 2,915,587-bp-long circular chromosome with GC content of 68.75%. Genome annotation identified 2,764 genes in total while 2,634 open reading frames belonged to protein-coding genes. Although functional annotation of the genome and division of genes into Clusters of Orthologous Groups (COGs) revealed a relatively high number of 694 genes with unknown function or unknown COG, the majority of genes were assigned a function. Most of the genes, 406 in total, were involved in energy production and conversion, and amino acid transport and metabolism. Moreover, particular key genes involved in the metabolism of PHA were identified. Knowledge of the genome in connection with the recently reported ability to produce bioplastics from the waste stream of wine production makes T. taiwanensis LMG 22826(T), an ideal candidate for further genome engineering as a bacterium with high biotechnological potential.
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spelling pubmed-87155222022-01-04 Complete Genome Sequence of the Type Strain Tepidimonas taiwanensis LMG 22826(T), a Thermophilic Alkaline Protease and Polyhydroxyalkanoate Producer Hermankova, Kristyna Kourilova, Xenie Pernicova, Iva Bezdicek, Matej Lengerova, Martina Obruca, Stanislav Sedlar, Karel Genome Biol Evol Genome Report Tepidimonas taiwanensis is a moderately thermophilic, Gram-negative, rod-shaped, chemoorganoheterotrophic, motile bacterium. The alkaline protease producing type strain T. taiwanensis LMG 22826(T) was recently reported to also be a promising producer of polyhydroxyalkanoates (PHAs)—renewable and biodegradable polymers representing an alternative to conventional plastics. Here, we present its first complete genome sequence which is also the first complete genome sequence of the whole species. The genome consists of a single 2,915,587-bp-long circular chromosome with GC content of 68.75%. Genome annotation identified 2,764 genes in total while 2,634 open reading frames belonged to protein-coding genes. Although functional annotation of the genome and division of genes into Clusters of Orthologous Groups (COGs) revealed a relatively high number of 694 genes with unknown function or unknown COG, the majority of genes were assigned a function. Most of the genes, 406 in total, were involved in energy production and conversion, and amino acid transport and metabolism. Moreover, particular key genes involved in the metabolism of PHA were identified. Knowledge of the genome in connection with the recently reported ability to produce bioplastics from the waste stream of wine production makes T. taiwanensis LMG 22826(T), an ideal candidate for further genome engineering as a bacterium with high biotechnological potential. Oxford University Press 2021-12-15 /pmc/articles/PMC8715522/ /pubmed/34908127 http://dx.doi.org/10.1093/gbe/evab280 Text en © The Author(s) 2021. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (https://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Genome Report
Hermankova, Kristyna
Kourilova, Xenie
Pernicova, Iva
Bezdicek, Matej
Lengerova, Martina
Obruca, Stanislav
Sedlar, Karel
Complete Genome Sequence of the Type Strain Tepidimonas taiwanensis LMG 22826(T), a Thermophilic Alkaline Protease and Polyhydroxyalkanoate Producer
title Complete Genome Sequence of the Type Strain Tepidimonas taiwanensis LMG 22826(T), a Thermophilic Alkaline Protease and Polyhydroxyalkanoate Producer
title_full Complete Genome Sequence of the Type Strain Tepidimonas taiwanensis LMG 22826(T), a Thermophilic Alkaline Protease and Polyhydroxyalkanoate Producer
title_fullStr Complete Genome Sequence of the Type Strain Tepidimonas taiwanensis LMG 22826(T), a Thermophilic Alkaline Protease and Polyhydroxyalkanoate Producer
title_full_unstemmed Complete Genome Sequence of the Type Strain Tepidimonas taiwanensis LMG 22826(T), a Thermophilic Alkaline Protease and Polyhydroxyalkanoate Producer
title_short Complete Genome Sequence of the Type Strain Tepidimonas taiwanensis LMG 22826(T), a Thermophilic Alkaline Protease and Polyhydroxyalkanoate Producer
title_sort complete genome sequence of the type strain tepidimonas taiwanensis lmg 22826(t), a thermophilic alkaline protease and polyhydroxyalkanoate producer
topic Genome Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8715522/
https://www.ncbi.nlm.nih.gov/pubmed/34908127
http://dx.doi.org/10.1093/gbe/evab280
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