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Establishment of a simple method to evaluate mixing times in a plastic bag photobioreactor using image processing based on freeware tools
OBJECTIVE: Accurate determination of the mixing time in bioreactors is essential for the optimization of the productivity of bioprocesses. The aim of this work was to develop a simple optical method to determine the mixing time in a photobioreactor. The image processing method should be based on fre...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8715616/ https://www.ncbi.nlm.nih.gov/pubmed/34965888 http://dx.doi.org/10.1186/s13104-021-05892-2 |
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author | Wurm, Henrike Sandmann, Michael |
author_facet | Wurm, Henrike Sandmann, Michael |
author_sort | Wurm, Henrike |
collection | PubMed |
description | OBJECTIVE: Accurate determination of the mixing time in bioreactors is essential for the optimization of the productivity of bioprocesses. The aim of this work was to develop a simple optical method to determine the mixing time in a photobioreactor. The image processing method should be based on freeware tools, should not require programming skills, and thus could be used in education within high schools and in early stages of undergraduate programs. RESULTS: An optical method has been established to analyze images from recorded videos of mixing experiments. The steps are: 1. Extraction of a sequence of images from the video file; 2. Cropping of the pictures; 3. Background removal; and 4. Image analysis and mixing time evaluation based on quantification of pixel-to-pixel heterogeneity within a given area of interest. The novel method was generally able to track the dependency between aeration rate and mixing time within the investigated photobioreactor. In direct comparison, a pearson correlation coefficient of rho = 0.99 was obtained. Gas flow rates between 10 L h(−1), and 300 L h(−1) resulted from mixing times of between 48 and 14 s, respectively. This technique is applicable without programming skills and can be used in education with inexperienced user groups. |
format | Online Article Text |
id | pubmed-8715616 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-87156162022-01-05 Establishment of a simple method to evaluate mixing times in a plastic bag photobioreactor using image processing based on freeware tools Wurm, Henrike Sandmann, Michael BMC Res Notes Research Note OBJECTIVE: Accurate determination of the mixing time in bioreactors is essential for the optimization of the productivity of bioprocesses. The aim of this work was to develop a simple optical method to determine the mixing time in a photobioreactor. The image processing method should be based on freeware tools, should not require programming skills, and thus could be used in education within high schools and in early stages of undergraduate programs. RESULTS: An optical method has been established to analyze images from recorded videos of mixing experiments. The steps are: 1. Extraction of a sequence of images from the video file; 2. Cropping of the pictures; 3. Background removal; and 4. Image analysis and mixing time evaluation based on quantification of pixel-to-pixel heterogeneity within a given area of interest. The novel method was generally able to track the dependency between aeration rate and mixing time within the investigated photobioreactor. In direct comparison, a pearson correlation coefficient of rho = 0.99 was obtained. Gas flow rates between 10 L h(−1), and 300 L h(−1) resulted from mixing times of between 48 and 14 s, respectively. This technique is applicable without programming skills and can be used in education with inexperienced user groups. BioMed Central 2021-12-29 /pmc/articles/PMC8715616/ /pubmed/34965888 http://dx.doi.org/10.1186/s13104-021-05892-2 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Research Note Wurm, Henrike Sandmann, Michael Establishment of a simple method to evaluate mixing times in a plastic bag photobioreactor using image processing based on freeware tools |
title | Establishment of a simple method to evaluate mixing times in a plastic bag photobioreactor using image processing based on freeware tools |
title_full | Establishment of a simple method to evaluate mixing times in a plastic bag photobioreactor using image processing based on freeware tools |
title_fullStr | Establishment of a simple method to evaluate mixing times in a plastic bag photobioreactor using image processing based on freeware tools |
title_full_unstemmed | Establishment of a simple method to evaluate mixing times in a plastic bag photobioreactor using image processing based on freeware tools |
title_short | Establishment of a simple method to evaluate mixing times in a plastic bag photobioreactor using image processing based on freeware tools |
title_sort | establishment of a simple method to evaluate mixing times in a plastic bag photobioreactor using image processing based on freeware tools |
topic | Research Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8715616/ https://www.ncbi.nlm.nih.gov/pubmed/34965888 http://dx.doi.org/10.1186/s13104-021-05892-2 |
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