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Using bi-dimensional representations to understand patterns in COVID-19 blood exam data

Blood tests play an essential role in everyday medicine and are used by doctors in several diagnostic procedures. Moreover, this data is multivariate – and often some diseases, such as COVID-19, could have different symptom manifestations and outcomes. This study proposes a method of extracting usef...

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Detalles Bibliográficos
Autores principales: Bezzan, Vitor P., Rocco, Cleber D.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Authors. Published by Elsevier Ltd. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8716149/
https://www.ncbi.nlm.nih.gov/pubmed/34981033
http://dx.doi.org/10.1016/j.imu.2021.100828
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author Bezzan, Vitor P.
Rocco, Cleber D.
author_facet Bezzan, Vitor P.
Rocco, Cleber D.
author_sort Bezzan, Vitor P.
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description Blood tests play an essential role in everyday medicine and are used by doctors in several diagnostic procedures. Moreover, this data is multivariate – and often some diseases, such as COVID-19, could have different symptom manifestations and outcomes. This study proposes a method of extracting useful information from blood tests using UMAP technique - Uniform Manifold Approximation and Projection for Dimension Reduction combined with DBSCAN clustering and statistical approaches. The analysis performed here indicates several clusters of infection prevalence varying between 2%–37%, showing that our procedure is indeed capable of finding different patterns. A possible explanation is that COVID-19 is not just a respiratory infection but a systemic disease with critical hematological implications, primarily on white-cell fractions, as indicated by relevant statistical test [Formula: see text]-values in the range of 0.03–0.1. The novel analysis procedure proposed could be adopted in other data-sets of different illnesses to help researchers to discover new patterns of data that could be used in various diseases and contexts.
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spelling pubmed-87161492021-12-30 Using bi-dimensional representations to understand patterns in COVID-19 blood exam data Bezzan, Vitor P. Rocco, Cleber D. Inform Med Unlocked Article Blood tests play an essential role in everyday medicine and are used by doctors in several diagnostic procedures. Moreover, this data is multivariate – and often some diseases, such as COVID-19, could have different symptom manifestations and outcomes. This study proposes a method of extracting useful information from blood tests using UMAP technique - Uniform Manifold Approximation and Projection for Dimension Reduction combined with DBSCAN clustering and statistical approaches. The analysis performed here indicates several clusters of infection prevalence varying between 2%–37%, showing that our procedure is indeed capable of finding different patterns. A possible explanation is that COVID-19 is not just a respiratory infection but a systemic disease with critical hematological implications, primarily on white-cell fractions, as indicated by relevant statistical test [Formula: see text]-values in the range of 0.03–0.1. The novel analysis procedure proposed could be adopted in other data-sets of different illnesses to help researchers to discover new patterns of data that could be used in various diseases and contexts. The Authors. Published by Elsevier Ltd. 2022 2021-12-30 /pmc/articles/PMC8716149/ /pubmed/34981033 http://dx.doi.org/10.1016/j.imu.2021.100828 Text en © 2022 The Authors Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Article
Bezzan, Vitor P.
Rocco, Cleber D.
Using bi-dimensional representations to understand patterns in COVID-19 blood exam data
title Using bi-dimensional representations to understand patterns in COVID-19 blood exam data
title_full Using bi-dimensional representations to understand patterns in COVID-19 blood exam data
title_fullStr Using bi-dimensional representations to understand patterns in COVID-19 blood exam data
title_full_unstemmed Using bi-dimensional representations to understand patterns in COVID-19 blood exam data
title_short Using bi-dimensional representations to understand patterns in COVID-19 blood exam data
title_sort using bi-dimensional representations to understand patterns in covid-19 blood exam data
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8716149/
https://www.ncbi.nlm.nih.gov/pubmed/34981033
http://dx.doi.org/10.1016/j.imu.2021.100828
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