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Identification of a Ten-Gene Signature of DNA Damage Response Pathways with Prognostic Value in Esophageal Squamous Cell Carcinoma
Molecular prognostic signatures are critical for treatment decision-making in esophageal squamous cell cancer (ESCC), but the robustness of these signatures is limited. The aberrant DNA damage response (DDR) pathway may lead to the accumulation of mutations and thus accelerate tumor progression in E...
Autores principales: | , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Hindawi
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8716225/ https://www.ncbi.nlm.nih.gov/pubmed/34976055 http://dx.doi.org/10.1155/2021/3726058 |
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author | Zhuang, Weitao Ben, Xiaosong Zhou, Zihao Ding, Yu Tang, Yong Huang, Shujie Deng, Cheng Liao, Yuchen Zhou, Qiaoxia Zhao, Jing Wang, Guoqiang Xu, Yu Wen, Xiaofang Zhang, Yuzi Cai, Shangli Chen, Rixin Qiao, Guibin |
author_facet | Zhuang, Weitao Ben, Xiaosong Zhou, Zihao Ding, Yu Tang, Yong Huang, Shujie Deng, Cheng Liao, Yuchen Zhou, Qiaoxia Zhao, Jing Wang, Guoqiang Xu, Yu Wen, Xiaofang Zhang, Yuzi Cai, Shangli Chen, Rixin Qiao, Guibin |
author_sort | Zhuang, Weitao |
collection | PubMed |
description | Molecular prognostic signatures are critical for treatment decision-making in esophageal squamous cell cancer (ESCC), but the robustness of these signatures is limited. The aberrant DNA damage response (DDR) pathway may lead to the accumulation of mutations and thus accelerate tumor progression in ESCC. Given this, we applied the LASSO Cox regression to the transcriptomic data of DDR genes, and a prognostic DDR-related gene expression signature (DRGS) consisting of ten genes was constructed, including PARP3, POLB, XRCC5, MLH1, DMC1, GTF2H3, PER1, SMC5, TCEA1, and HERC2. The DRGS was independently associated with overall survival in both training and validation cohorts. The DRGS achieved higher accuracy than six previously reported multigene signatures for the prediction of prognosis in comparable cohorts. Furtherly, a nomogram incorporating DRGS and clinicopathological features showed improved predicting performance. Taken together, the DRGS was identified as a novel, robust, and effective prognostic indicator, which may refine the scheme of risk stratification and management in ESCC patients. |
format | Online Article Text |
id | pubmed-8716225 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Hindawi |
record_format | MEDLINE/PubMed |
spelling | pubmed-87162252021-12-30 Identification of a Ten-Gene Signature of DNA Damage Response Pathways with Prognostic Value in Esophageal Squamous Cell Carcinoma Zhuang, Weitao Ben, Xiaosong Zhou, Zihao Ding, Yu Tang, Yong Huang, Shujie Deng, Cheng Liao, Yuchen Zhou, Qiaoxia Zhao, Jing Wang, Guoqiang Xu, Yu Wen, Xiaofang Zhang, Yuzi Cai, Shangli Chen, Rixin Qiao, Guibin J Oncol Research Article Molecular prognostic signatures are critical for treatment decision-making in esophageal squamous cell cancer (ESCC), but the robustness of these signatures is limited. The aberrant DNA damage response (DDR) pathway may lead to the accumulation of mutations and thus accelerate tumor progression in ESCC. Given this, we applied the LASSO Cox regression to the transcriptomic data of DDR genes, and a prognostic DDR-related gene expression signature (DRGS) consisting of ten genes was constructed, including PARP3, POLB, XRCC5, MLH1, DMC1, GTF2H3, PER1, SMC5, TCEA1, and HERC2. The DRGS was independently associated with overall survival in both training and validation cohorts. The DRGS achieved higher accuracy than six previously reported multigene signatures for the prediction of prognosis in comparable cohorts. Furtherly, a nomogram incorporating DRGS and clinicopathological features showed improved predicting performance. Taken together, the DRGS was identified as a novel, robust, and effective prognostic indicator, which may refine the scheme of risk stratification and management in ESCC patients. Hindawi 2021-12-22 /pmc/articles/PMC8716225/ /pubmed/34976055 http://dx.doi.org/10.1155/2021/3726058 Text en Copyright © 2021 Weitao Zhuang et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Article Zhuang, Weitao Ben, Xiaosong Zhou, Zihao Ding, Yu Tang, Yong Huang, Shujie Deng, Cheng Liao, Yuchen Zhou, Qiaoxia Zhao, Jing Wang, Guoqiang Xu, Yu Wen, Xiaofang Zhang, Yuzi Cai, Shangli Chen, Rixin Qiao, Guibin Identification of a Ten-Gene Signature of DNA Damage Response Pathways with Prognostic Value in Esophageal Squamous Cell Carcinoma |
title | Identification of a Ten-Gene Signature of DNA Damage Response Pathways with Prognostic Value in Esophageal Squamous Cell Carcinoma |
title_full | Identification of a Ten-Gene Signature of DNA Damage Response Pathways with Prognostic Value in Esophageal Squamous Cell Carcinoma |
title_fullStr | Identification of a Ten-Gene Signature of DNA Damage Response Pathways with Prognostic Value in Esophageal Squamous Cell Carcinoma |
title_full_unstemmed | Identification of a Ten-Gene Signature of DNA Damage Response Pathways with Prognostic Value in Esophageal Squamous Cell Carcinoma |
title_short | Identification of a Ten-Gene Signature of DNA Damage Response Pathways with Prognostic Value in Esophageal Squamous Cell Carcinoma |
title_sort | identification of a ten-gene signature of dna damage response pathways with prognostic value in esophageal squamous cell carcinoma |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8716225/ https://www.ncbi.nlm.nih.gov/pubmed/34976055 http://dx.doi.org/10.1155/2021/3726058 |
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