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Identification of a Ten-Gene Signature of DNA Damage Response Pathways with Prognostic Value in Esophageal Squamous Cell Carcinoma

Molecular prognostic signatures are critical for treatment decision-making in esophageal squamous cell cancer (ESCC), but the robustness of these signatures is limited. The aberrant DNA damage response (DDR) pathway may lead to the accumulation of mutations and thus accelerate tumor progression in E...

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Autores principales: Zhuang, Weitao, Ben, Xiaosong, Zhou, Zihao, Ding, Yu, Tang, Yong, Huang, Shujie, Deng, Cheng, Liao, Yuchen, Zhou, Qiaoxia, Zhao, Jing, Wang, Guoqiang, Xu, Yu, Wen, Xiaofang, Zhang, Yuzi, Cai, Shangli, Chen, Rixin, Qiao, Guibin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Hindawi 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8716225/
https://www.ncbi.nlm.nih.gov/pubmed/34976055
http://dx.doi.org/10.1155/2021/3726058
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author Zhuang, Weitao
Ben, Xiaosong
Zhou, Zihao
Ding, Yu
Tang, Yong
Huang, Shujie
Deng, Cheng
Liao, Yuchen
Zhou, Qiaoxia
Zhao, Jing
Wang, Guoqiang
Xu, Yu
Wen, Xiaofang
Zhang, Yuzi
Cai, Shangli
Chen, Rixin
Qiao, Guibin
author_facet Zhuang, Weitao
Ben, Xiaosong
Zhou, Zihao
Ding, Yu
Tang, Yong
Huang, Shujie
Deng, Cheng
Liao, Yuchen
Zhou, Qiaoxia
Zhao, Jing
Wang, Guoqiang
Xu, Yu
Wen, Xiaofang
Zhang, Yuzi
Cai, Shangli
Chen, Rixin
Qiao, Guibin
author_sort Zhuang, Weitao
collection PubMed
description Molecular prognostic signatures are critical for treatment decision-making in esophageal squamous cell cancer (ESCC), but the robustness of these signatures is limited. The aberrant DNA damage response (DDR) pathway may lead to the accumulation of mutations and thus accelerate tumor progression in ESCC. Given this, we applied the LASSO Cox regression to the transcriptomic data of DDR genes, and a prognostic DDR-related gene expression signature (DRGS) consisting of ten genes was constructed, including PARP3, POLB, XRCC5, MLH1, DMC1, GTF2H3, PER1, SMC5, TCEA1, and HERC2. The DRGS was independently associated with overall survival in both training and validation cohorts. The DRGS achieved higher accuracy than six previously reported multigene signatures for the prediction of prognosis in comparable cohorts. Furtherly, a nomogram incorporating DRGS and clinicopathological features showed improved predicting performance. Taken together, the DRGS was identified as a novel, robust, and effective prognostic indicator, which may refine the scheme of risk stratification and management in ESCC patients.
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spelling pubmed-87162252021-12-30 Identification of a Ten-Gene Signature of DNA Damage Response Pathways with Prognostic Value in Esophageal Squamous Cell Carcinoma Zhuang, Weitao Ben, Xiaosong Zhou, Zihao Ding, Yu Tang, Yong Huang, Shujie Deng, Cheng Liao, Yuchen Zhou, Qiaoxia Zhao, Jing Wang, Guoqiang Xu, Yu Wen, Xiaofang Zhang, Yuzi Cai, Shangli Chen, Rixin Qiao, Guibin J Oncol Research Article Molecular prognostic signatures are critical for treatment decision-making in esophageal squamous cell cancer (ESCC), but the robustness of these signatures is limited. The aberrant DNA damage response (DDR) pathway may lead to the accumulation of mutations and thus accelerate tumor progression in ESCC. Given this, we applied the LASSO Cox regression to the transcriptomic data of DDR genes, and a prognostic DDR-related gene expression signature (DRGS) consisting of ten genes was constructed, including PARP3, POLB, XRCC5, MLH1, DMC1, GTF2H3, PER1, SMC5, TCEA1, and HERC2. The DRGS was independently associated with overall survival in both training and validation cohorts. The DRGS achieved higher accuracy than six previously reported multigene signatures for the prediction of prognosis in comparable cohorts. Furtherly, a nomogram incorporating DRGS and clinicopathological features showed improved predicting performance. Taken together, the DRGS was identified as a novel, robust, and effective prognostic indicator, which may refine the scheme of risk stratification and management in ESCC patients. Hindawi 2021-12-22 /pmc/articles/PMC8716225/ /pubmed/34976055 http://dx.doi.org/10.1155/2021/3726058 Text en Copyright © 2021 Weitao Zhuang et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Zhuang, Weitao
Ben, Xiaosong
Zhou, Zihao
Ding, Yu
Tang, Yong
Huang, Shujie
Deng, Cheng
Liao, Yuchen
Zhou, Qiaoxia
Zhao, Jing
Wang, Guoqiang
Xu, Yu
Wen, Xiaofang
Zhang, Yuzi
Cai, Shangli
Chen, Rixin
Qiao, Guibin
Identification of a Ten-Gene Signature of DNA Damage Response Pathways with Prognostic Value in Esophageal Squamous Cell Carcinoma
title Identification of a Ten-Gene Signature of DNA Damage Response Pathways with Prognostic Value in Esophageal Squamous Cell Carcinoma
title_full Identification of a Ten-Gene Signature of DNA Damage Response Pathways with Prognostic Value in Esophageal Squamous Cell Carcinoma
title_fullStr Identification of a Ten-Gene Signature of DNA Damage Response Pathways with Prognostic Value in Esophageal Squamous Cell Carcinoma
title_full_unstemmed Identification of a Ten-Gene Signature of DNA Damage Response Pathways with Prognostic Value in Esophageal Squamous Cell Carcinoma
title_short Identification of a Ten-Gene Signature of DNA Damage Response Pathways with Prognostic Value in Esophageal Squamous Cell Carcinoma
title_sort identification of a ten-gene signature of dna damage response pathways with prognostic value in esophageal squamous cell carcinoma
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8716225/
https://www.ncbi.nlm.nih.gov/pubmed/34976055
http://dx.doi.org/10.1155/2021/3726058
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