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Bridging implementation gaps to connect large ecological datasets and complex models

Merging robust statistical methods with complex simulation models is a frontier for improving ecological inference and forecasting. However, bringing these tools together is not always straightforward. Matching data with model output, determining starting conditions, and addressing high dimensionali...

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Autores principales: Raiho, Ann M., Nicklen, E. Fleur, Foster, Adrianna C., Roland, Carl A., Hooten, Mevin B.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8717344/
https://www.ncbi.nlm.nih.gov/pubmed/35003672
http://dx.doi.org/10.1002/ece3.8420
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author Raiho, Ann M.
Nicklen, E. Fleur
Foster, Adrianna C.
Roland, Carl A.
Hooten, Mevin B.
author_facet Raiho, Ann M.
Nicklen, E. Fleur
Foster, Adrianna C.
Roland, Carl A.
Hooten, Mevin B.
author_sort Raiho, Ann M.
collection PubMed
description Merging robust statistical methods with complex simulation models is a frontier for improving ecological inference and forecasting. However, bringing these tools together is not always straightforward. Matching data with model output, determining starting conditions, and addressing high dimensionality are some of the complexities that arise when attempting to incorporate ecological field data with mechanistic models directly using sophisticated statistical methods. To illustrate these complexities and pragmatic paths forward, we present an analysis using tree‐ring basal area reconstructions in Denali National Park (DNPP) to constrain successional trajectories of two spruce species (Picea mariana and Picea glauca) simulated by a forest gap model, University of Virginia Forest Model Enhanced—UVAFME. Through this process, we provide preliminary ecological inference about the long‐term competitive dynamics between slow‐growing P. mariana and relatively faster‐growing P. glauca. Incorporating tree‐ring data into UVAFME allowed us to estimate a bias correction for stand age with improved parameter estimates. We found that higher parameter values for P. mariana minimum growth under stress and P. glauca maximum growth rate were key to improving simulations of coexistence, agreeing with recent research that faster‐growing P. glauca may outcompete P. mariana under climate change scenarios. The implementation challenges we highlight are a crucial part of the conversation for how to bring models together with data to improve ecological inference and forecasting.
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spelling pubmed-87173442022-01-06 Bridging implementation gaps to connect large ecological datasets and complex models Raiho, Ann M. Nicklen, E. Fleur Foster, Adrianna C. Roland, Carl A. Hooten, Mevin B. Ecol Evol Research Articles Merging robust statistical methods with complex simulation models is a frontier for improving ecological inference and forecasting. However, bringing these tools together is not always straightforward. Matching data with model output, determining starting conditions, and addressing high dimensionality are some of the complexities that arise when attempting to incorporate ecological field data with mechanistic models directly using sophisticated statistical methods. To illustrate these complexities and pragmatic paths forward, we present an analysis using tree‐ring basal area reconstructions in Denali National Park (DNPP) to constrain successional trajectories of two spruce species (Picea mariana and Picea glauca) simulated by a forest gap model, University of Virginia Forest Model Enhanced—UVAFME. Through this process, we provide preliminary ecological inference about the long‐term competitive dynamics between slow‐growing P. mariana and relatively faster‐growing P. glauca. Incorporating tree‐ring data into UVAFME allowed us to estimate a bias correction for stand age with improved parameter estimates. We found that higher parameter values for P. mariana minimum growth under stress and P. glauca maximum growth rate were key to improving simulations of coexistence, agreeing with recent research that faster‐growing P. glauca may outcompete P. mariana under climate change scenarios. The implementation challenges we highlight are a crucial part of the conversation for how to bring models together with data to improve ecological inference and forecasting. John Wiley and Sons Inc. 2021-12-14 /pmc/articles/PMC8717344/ /pubmed/35003672 http://dx.doi.org/10.1002/ece3.8420 Text en © 2021 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd. This article has been contributed to by US Government employees and their work is in the public domain in the USA. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Articles
Raiho, Ann M.
Nicklen, E. Fleur
Foster, Adrianna C.
Roland, Carl A.
Hooten, Mevin B.
Bridging implementation gaps to connect large ecological datasets and complex models
title Bridging implementation gaps to connect large ecological datasets and complex models
title_full Bridging implementation gaps to connect large ecological datasets and complex models
title_fullStr Bridging implementation gaps to connect large ecological datasets and complex models
title_full_unstemmed Bridging implementation gaps to connect large ecological datasets and complex models
title_short Bridging implementation gaps to connect large ecological datasets and complex models
title_sort bridging implementation gaps to connect large ecological datasets and complex models
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8717344/
https://www.ncbi.nlm.nih.gov/pubmed/35003672
http://dx.doi.org/10.1002/ece3.8420
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