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Data on draft genome assembly and annotation of Haloxylon salicornicum Moq.
Haloxylon salicornicum Moq. Bunge ex Boiss (Rimth) is one of the main structural elements in Eastern Arabian vegetation associations. The plant is utilized as a food source for domestic stock, stabilizes the soil surface besides providing suitable microclimates for exotic species. It is considered o...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8717446/ https://www.ncbi.nlm.nih.gov/pubmed/35005129 http://dx.doi.org/10.1016/j.dib.2021.107721 |
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author | Al Salameen, Fadila Habibi, Nazima Al Amad, Sami Al Doaij, Bashayer |
author_facet | Al Salameen, Fadila Habibi, Nazima Al Amad, Sami Al Doaij, Bashayer |
author_sort | Al Salameen, Fadila |
collection | PubMed |
description | Haloxylon salicornicum Moq. Bunge ex Boiss (Rimth) is one of the main structural elements in Eastern Arabian vegetation associations. The plant is utilized as a food source for domestic stock, stabilizes the soil surface besides providing suitable microclimates for exotic species. It is considered one of the most promising species for re-vegetation. H. salicornicum community is under threat from overgrazing leading to a reduction in the percentage of distribution from 22.7% to 2.2% in Kuwait. Therefore, genome characterization of this important Kuwaiti plant is required to formulate strategies for its conservation. Here we report the draft of the H. salicornicum genome, which was sequenced on an Illumina HiSeq 2500 platform. BUSCO assessment revealed 69% of the genome was to be complete. Overall, 12960 gene structures, 11280 protein-coding genes, 11309 mRNAs (protein-coding), 51265 exons and 48100 CDSs were predicted. Functional annotation was carried out by interproscan-5.29-68.0. A total of 7222 protein-coding sequences were, annotated out of 11309 by at least one ontology term. All these genes were associated with 11 major biological processes branched into 60 child processes. |
format | Online Article Text |
id | pubmed-8717446 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-87174462022-01-06 Data on draft genome assembly and annotation of Haloxylon salicornicum Moq. Al Salameen, Fadila Habibi, Nazima Al Amad, Sami Al Doaij, Bashayer Data Brief Data Article Haloxylon salicornicum Moq. Bunge ex Boiss (Rimth) is one of the main structural elements in Eastern Arabian vegetation associations. The plant is utilized as a food source for domestic stock, stabilizes the soil surface besides providing suitable microclimates for exotic species. It is considered one of the most promising species for re-vegetation. H. salicornicum community is under threat from overgrazing leading to a reduction in the percentage of distribution from 22.7% to 2.2% in Kuwait. Therefore, genome characterization of this important Kuwaiti plant is required to formulate strategies for its conservation. Here we report the draft of the H. salicornicum genome, which was sequenced on an Illumina HiSeq 2500 platform. BUSCO assessment revealed 69% of the genome was to be complete. Overall, 12960 gene structures, 11280 protein-coding genes, 11309 mRNAs (protein-coding), 51265 exons and 48100 CDSs were predicted. Functional annotation was carried out by interproscan-5.29-68.0. A total of 7222 protein-coding sequences were, annotated out of 11309 by at least one ontology term. All these genes were associated with 11 major biological processes branched into 60 child processes. Elsevier 2021-12-16 /pmc/articles/PMC8717446/ /pubmed/35005129 http://dx.doi.org/10.1016/j.dib.2021.107721 Text en © 2021 The Authors https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Data Article Al Salameen, Fadila Habibi, Nazima Al Amad, Sami Al Doaij, Bashayer Data on draft genome assembly and annotation of Haloxylon salicornicum Moq. |
title | Data on draft genome assembly and annotation of Haloxylon salicornicum Moq. |
title_full | Data on draft genome assembly and annotation of Haloxylon salicornicum Moq. |
title_fullStr | Data on draft genome assembly and annotation of Haloxylon salicornicum Moq. |
title_full_unstemmed | Data on draft genome assembly and annotation of Haloxylon salicornicum Moq. |
title_short | Data on draft genome assembly and annotation of Haloxylon salicornicum Moq. |
title_sort | data on draft genome assembly and annotation of haloxylon salicornicum moq. |
topic | Data Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8717446/ https://www.ncbi.nlm.nih.gov/pubmed/35005129 http://dx.doi.org/10.1016/j.dib.2021.107721 |
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