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Artificial‐intelligence‐driven discovery of prognostic biomarker for sarcopenia

BACKGROUND: Sarcopenia is defined as muscle wasting, characterized by a progressive loss of muscle mass and function due to ageing. Diagnosis of sarcopenia typically involves both muscle imaging and the physical performance of people exhibiting signs of muscle weakness. Despite its worldwide prevale...

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Autores principales: Chung, Heewon, Jo, Yunju, Ryu, Dongryeol, Jeong, Changwon, Choe, Seong‐Kyu, Lee, Jinseok
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8718042/
https://www.ncbi.nlm.nih.gov/pubmed/34704369
http://dx.doi.org/10.1002/jcsm.12840
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author Chung, Heewon
Jo, Yunju
Ryu, Dongryeol
Jeong, Changwon
Choe, Seong‐Kyu
Lee, Jinseok
author_facet Chung, Heewon
Jo, Yunju
Ryu, Dongryeol
Jeong, Changwon
Choe, Seong‐Kyu
Lee, Jinseok
author_sort Chung, Heewon
collection PubMed
description BACKGROUND: Sarcopenia is defined as muscle wasting, characterized by a progressive loss of muscle mass and function due to ageing. Diagnosis of sarcopenia typically involves both muscle imaging and the physical performance of people exhibiting signs of muscle weakness. Despite its worldwide prevalence, a molecular method for accurately diagnosing sarcopenia has not been established. METHODS: We develop an artificial intelligence (AI) diagnosis model of sarcopenia using a published transcriptome dataset comprising patients from multiple ethnicities. For the AI model for sarcopenia diagnosis, we use a transcriptome database comprising 17 339 genes from 118 subjects. Among the 17 339 genes, we select 27 features as the model inputs. For feature selection, we use a random forest, extreme gradient boosting and adaptive boosting. Using the top 27 features, we propose a four‐layer deep neural network, named DSnet‐v1, for sarcopenia diagnosis. RESULTS: Among isolated testing datasets, DSnet‐v1 provides high sensitivity (100%), specificity (94.12%), accuracy (95.83%), balanced accuracy (97.06%) and area under receiver operating characteristics (0.99). To extend the number of patient data, we develop a web application (http://sarcopeniaAI.ml/), where the model can be accessed unrestrictedly to diagnose sarcopenia if the transcriptome is available. A focused analysis of the top 27 genes for their differential or co‐expression with other genes implied the potential existence of race‐specific factors for sarcopenia, suggesting the possibility of identifying causal factors of sarcopenia when a more extended dataset is provided. CONCLUSIONS: Our new AI model, DSnet‐v1, accurately diagnoses sarcopenia and is currently available publicly to assist healthcare providers in diagnosing and treating sarcopenia.
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spelling pubmed-87180422022-01-06 Artificial‐intelligence‐driven discovery of prognostic biomarker for sarcopenia Chung, Heewon Jo, Yunju Ryu, Dongryeol Jeong, Changwon Choe, Seong‐Kyu Lee, Jinseok J Cachexia Sarcopenia Muscle Original Articles BACKGROUND: Sarcopenia is defined as muscle wasting, characterized by a progressive loss of muscle mass and function due to ageing. Diagnosis of sarcopenia typically involves both muscle imaging and the physical performance of people exhibiting signs of muscle weakness. Despite its worldwide prevalence, a molecular method for accurately diagnosing sarcopenia has not been established. METHODS: We develop an artificial intelligence (AI) diagnosis model of sarcopenia using a published transcriptome dataset comprising patients from multiple ethnicities. For the AI model for sarcopenia diagnosis, we use a transcriptome database comprising 17 339 genes from 118 subjects. Among the 17 339 genes, we select 27 features as the model inputs. For feature selection, we use a random forest, extreme gradient boosting and adaptive boosting. Using the top 27 features, we propose a four‐layer deep neural network, named DSnet‐v1, for sarcopenia diagnosis. RESULTS: Among isolated testing datasets, DSnet‐v1 provides high sensitivity (100%), specificity (94.12%), accuracy (95.83%), balanced accuracy (97.06%) and area under receiver operating characteristics (0.99). To extend the number of patient data, we develop a web application (http://sarcopeniaAI.ml/), where the model can be accessed unrestrictedly to diagnose sarcopenia if the transcriptome is available. A focused analysis of the top 27 genes for their differential or co‐expression with other genes implied the potential existence of race‐specific factors for sarcopenia, suggesting the possibility of identifying causal factors of sarcopenia when a more extended dataset is provided. CONCLUSIONS: Our new AI model, DSnet‐v1, accurately diagnoses sarcopenia and is currently available publicly to assist healthcare providers in diagnosing and treating sarcopenia. John Wiley and Sons Inc. 2021-10-26 2021-12 /pmc/articles/PMC8718042/ /pubmed/34704369 http://dx.doi.org/10.1002/jcsm.12840 Text en © 2021 The Authors. Journal of Cachexia, Sarcopenia and Muscle published by John Wiley & Sons Ltd on behalf of Society on Sarcopenia, Cachexia and Wasting Disorders. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Articles
Chung, Heewon
Jo, Yunju
Ryu, Dongryeol
Jeong, Changwon
Choe, Seong‐Kyu
Lee, Jinseok
Artificial‐intelligence‐driven discovery of prognostic biomarker for sarcopenia
title Artificial‐intelligence‐driven discovery of prognostic biomarker for sarcopenia
title_full Artificial‐intelligence‐driven discovery of prognostic biomarker for sarcopenia
title_fullStr Artificial‐intelligence‐driven discovery of prognostic biomarker for sarcopenia
title_full_unstemmed Artificial‐intelligence‐driven discovery of prognostic biomarker for sarcopenia
title_short Artificial‐intelligence‐driven discovery of prognostic biomarker for sarcopenia
title_sort artificial‐intelligence‐driven discovery of prognostic biomarker for sarcopenia
topic Original Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8718042/
https://www.ncbi.nlm.nih.gov/pubmed/34704369
http://dx.doi.org/10.1002/jcsm.12840
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