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Cohort profile: Copenhagen Hospital Biobank - Cardiovascular Disease Cohort (CHB-CVDC): Construction of a large-scale genetic cohort to facilitate a better understanding of heart diseases
PURPOSE: The aim of Copenhagen Hospital Biobank-Cardiovascular Disease Cohort (CHB-CVDC) is to establish a cohort that can accelerate our understanding of CVD initiation and progression by jointly studying genetics, diagnoses, treatments and risk factors. PARTICIPANTS: The CHB-CVDC is a large genomi...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BMJ Publishing Group
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8719218/ https://www.ncbi.nlm.nih.gov/pubmed/36070241 http://dx.doi.org/10.1136/bmjopen-2021-049709 |
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author | Laursen, Ina H Banasik, Karina Haue, Amalie D Petersen, Oscar Holm, Peter C Westergaard, David Bundgaard, Henning Brunak, Søren Frikke-Schmidt, Ruth Holm, Hilma Sørensen, Erik Thørner, Lise W Larsen, Margit A H Schwinn, Michael Køber, Lars Torp-Pedersen, Christian Ostrowski, Sisse R Erikstrup, Christian Nyegaard, Mette Stefánsson, Hreinn Gylfason, Arnaldur Zink, Florian Walters, G Bragi Oddsson, Asmundur Þorleifsson, Guðmar Másson, Gisli Thorsteinsdottir, Unnur Gudbjartsson, Daniel Pedersen, Ole B Stefánsson, Kári Ullum, Henrik |
author_facet | Laursen, Ina H Banasik, Karina Haue, Amalie D Petersen, Oscar Holm, Peter C Westergaard, David Bundgaard, Henning Brunak, Søren Frikke-Schmidt, Ruth Holm, Hilma Sørensen, Erik Thørner, Lise W Larsen, Margit A H Schwinn, Michael Køber, Lars Torp-Pedersen, Christian Ostrowski, Sisse R Erikstrup, Christian Nyegaard, Mette Stefánsson, Hreinn Gylfason, Arnaldur Zink, Florian Walters, G Bragi Oddsson, Asmundur Þorleifsson, Guðmar Másson, Gisli Thorsteinsdottir, Unnur Gudbjartsson, Daniel Pedersen, Ole B Stefánsson, Kári Ullum, Henrik |
author_sort | Laursen, Ina H |
collection | PubMed |
description | PURPOSE: The aim of Copenhagen Hospital Biobank-Cardiovascular Disease Cohort (CHB-CVDC) is to establish a cohort that can accelerate our understanding of CVD initiation and progression by jointly studying genetics, diagnoses, treatments and risk factors. PARTICIPANTS: The CHB-CVDC is a large genomic cohort of patients with CVD. CHB-CVDC currently includes 96 308 patients. The cohort is part of CHB initiated in 2009 in the Capital Region of Denmark. CHB is continuously growing with ~40 000 samples/year. Patients in CHB were included in CHB-CVDC if they were above 18 years of age and assigned at least one cardiovascular diagnosis. Additionally, up-to 110 000 blood donors can be analysed jointly with CHB-CVDC. Linkage with the Danish National Health Registries, Electronic Patient Records, and Clinical Quality Databases allow up-to 41 years of medical history. All individuals are genotyped using the Infinium Global Screening Array from Illumina and imputed using a reference panel consisting of whole-genome sequence data from 8429 Danes along with 7146 samples from North-Western Europe. Currently, 39 539 of the patients are deceased. FINDINGS TO DATE: Here, we demonstrate the utility of the cohort by showing concordant effects between known variants and selected CVDs, that is, >93% concordance for coronary artery disease, atrial fibrillation, heart failure and cholesterol measurements and 85% concordance for hypertension. Furthermore, we evaluated multiple study designs and the validity of using Danish blood donors as part of CHB-CVDC. Lastly, CHB-CVDC has already made major contributions to studies of sick sinus syndrome and the role of phytosterols in development of atherosclerosis. FUTURE PLANS: In addition to genetics, electronic patient records, national socioeconomic and health registries extensively characterise each patient in CHB-CVDC and provides a promising framework for improved understanding of risk and protective variants. We aim to include other measurable biomarkers for example, proteins in CHB-CVDC making it a platform for multiomics cardiovascular studies. |
format | Online Article Text |
id | pubmed-8719218 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | BMJ Publishing Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-87192182022-01-12 Cohort profile: Copenhagen Hospital Biobank - Cardiovascular Disease Cohort (CHB-CVDC): Construction of a large-scale genetic cohort to facilitate a better understanding of heart diseases Laursen, Ina H Banasik, Karina Haue, Amalie D Petersen, Oscar Holm, Peter C Westergaard, David Bundgaard, Henning Brunak, Søren Frikke-Schmidt, Ruth Holm, Hilma Sørensen, Erik Thørner, Lise W Larsen, Margit A H Schwinn, Michael Køber, Lars Torp-Pedersen, Christian Ostrowski, Sisse R Erikstrup, Christian Nyegaard, Mette Stefánsson, Hreinn Gylfason, Arnaldur Zink, Florian Walters, G Bragi Oddsson, Asmundur Þorleifsson, Guðmar Másson, Gisli Thorsteinsdottir, Unnur Gudbjartsson, Daniel Pedersen, Ole B Stefánsson, Kári Ullum, Henrik BMJ Open Genetics and Genomics PURPOSE: The aim of Copenhagen Hospital Biobank-Cardiovascular Disease Cohort (CHB-CVDC) is to establish a cohort that can accelerate our understanding of CVD initiation and progression by jointly studying genetics, diagnoses, treatments and risk factors. PARTICIPANTS: The CHB-CVDC is a large genomic cohort of patients with CVD. CHB-CVDC currently includes 96 308 patients. The cohort is part of CHB initiated in 2009 in the Capital Region of Denmark. CHB is continuously growing with ~40 000 samples/year. Patients in CHB were included in CHB-CVDC if they were above 18 years of age and assigned at least one cardiovascular diagnosis. Additionally, up-to 110 000 blood donors can be analysed jointly with CHB-CVDC. Linkage with the Danish National Health Registries, Electronic Patient Records, and Clinical Quality Databases allow up-to 41 years of medical history. All individuals are genotyped using the Infinium Global Screening Array from Illumina and imputed using a reference panel consisting of whole-genome sequence data from 8429 Danes along with 7146 samples from North-Western Europe. Currently, 39 539 of the patients are deceased. FINDINGS TO DATE: Here, we demonstrate the utility of the cohort by showing concordant effects between known variants and selected CVDs, that is, >93% concordance for coronary artery disease, atrial fibrillation, heart failure and cholesterol measurements and 85% concordance for hypertension. Furthermore, we evaluated multiple study designs and the validity of using Danish blood donors as part of CHB-CVDC. Lastly, CHB-CVDC has already made major contributions to studies of sick sinus syndrome and the role of phytosterols in development of atherosclerosis. FUTURE PLANS: In addition to genetics, electronic patient records, national socioeconomic and health registries extensively characterise each patient in CHB-CVDC and provides a promising framework for improved understanding of risk and protective variants. We aim to include other measurable biomarkers for example, proteins in CHB-CVDC making it a platform for multiomics cardiovascular studies. BMJ Publishing Group 2021-12-25 /pmc/articles/PMC8719218/ /pubmed/36070241 http://dx.doi.org/10.1136/bmjopen-2021-049709 Text en © Author(s) (or their employer(s)) 2021. Re-use permitted under CC BY-NC. No commercial re-use. See rights and permissions. Published by BMJ. https://creativecommons.org/licenses/by-nc/4.0/This is an open access article distributed in accordance with the Creative Commons Attribution Non Commercial (CC BY-NC 4.0) license, which permits others to distribute, remix, adapt, build upon this work non-commercially, and license their derivative works on different terms, provided the original work is properly cited, appropriate credit is given, any changes made indicated, and the use is non-commercial. See: http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) . |
spellingShingle | Genetics and Genomics Laursen, Ina H Banasik, Karina Haue, Amalie D Petersen, Oscar Holm, Peter C Westergaard, David Bundgaard, Henning Brunak, Søren Frikke-Schmidt, Ruth Holm, Hilma Sørensen, Erik Thørner, Lise W Larsen, Margit A H Schwinn, Michael Køber, Lars Torp-Pedersen, Christian Ostrowski, Sisse R Erikstrup, Christian Nyegaard, Mette Stefánsson, Hreinn Gylfason, Arnaldur Zink, Florian Walters, G Bragi Oddsson, Asmundur Þorleifsson, Guðmar Másson, Gisli Thorsteinsdottir, Unnur Gudbjartsson, Daniel Pedersen, Ole B Stefánsson, Kári Ullum, Henrik Cohort profile: Copenhagen Hospital Biobank - Cardiovascular Disease Cohort (CHB-CVDC): Construction of a large-scale genetic cohort to facilitate a better understanding of heart diseases |
title | Cohort profile: Copenhagen Hospital Biobank - Cardiovascular Disease Cohort (CHB-CVDC): Construction of a large-scale genetic cohort to facilitate a better understanding of heart diseases |
title_full | Cohort profile: Copenhagen Hospital Biobank - Cardiovascular Disease Cohort (CHB-CVDC): Construction of a large-scale genetic cohort to facilitate a better understanding of heart diseases |
title_fullStr | Cohort profile: Copenhagen Hospital Biobank - Cardiovascular Disease Cohort (CHB-CVDC): Construction of a large-scale genetic cohort to facilitate a better understanding of heart diseases |
title_full_unstemmed | Cohort profile: Copenhagen Hospital Biobank - Cardiovascular Disease Cohort (CHB-CVDC): Construction of a large-scale genetic cohort to facilitate a better understanding of heart diseases |
title_short | Cohort profile: Copenhagen Hospital Biobank - Cardiovascular Disease Cohort (CHB-CVDC): Construction of a large-scale genetic cohort to facilitate a better understanding of heart diseases |
title_sort | cohort profile: copenhagen hospital biobank - cardiovascular disease cohort (chb-cvdc): construction of a large-scale genetic cohort to facilitate a better understanding of heart diseases |
topic | Genetics and Genomics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8719218/ https://www.ncbi.nlm.nih.gov/pubmed/36070241 http://dx.doi.org/10.1136/bmjopen-2021-049709 |
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