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Large‐scale sequencing studies expand the known genetic architecture of Alzheimer's disease
INTRODUCTION: Genes implicated by genome‐wide association studies and family‐based studies of Alzheimer's disease (AD) are largely discordant. We hypothesized that genes identified by sequencing studies like the Alzheimer's Disease Sequencing Project (ADSP) may bridge this gap and highligh...
Autores principales: | , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8720139/ https://www.ncbi.nlm.nih.gov/pubmed/35005195 http://dx.doi.org/10.1002/dad2.12255 |
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author | Xue, Diane Bush, William S. Renton, Alan E. Marcora, Edoardo A. Bis, Joshua C. Kunkle, Brian W. Boerwinkle, Eric DeStefano, Anita L. Farrer, Lindsay Goate, Alison Mayeux, Richard Pericak‐Vance, Margaret Schellenberg, Gerard Seshadri, Sudha Wijsman, Ellen Haines, Jonathan L. Blue, Elizabeth E. |
author_facet | Xue, Diane Bush, William S. Renton, Alan E. Marcora, Edoardo A. Bis, Joshua C. Kunkle, Brian W. Boerwinkle, Eric DeStefano, Anita L. Farrer, Lindsay Goate, Alison Mayeux, Richard Pericak‐Vance, Margaret Schellenberg, Gerard Seshadri, Sudha Wijsman, Ellen Haines, Jonathan L. Blue, Elizabeth E. |
author_sort | Xue, Diane |
collection | PubMed |
description | INTRODUCTION: Genes implicated by genome‐wide association studies and family‐based studies of Alzheimer's disease (AD) are largely discordant. We hypothesized that genes identified by sequencing studies like the Alzheimer's Disease Sequencing Project (ADSP) may bridge this gap and highlight shared biological mechanisms. METHODS: We performed structured literature review of genes prioritized by ADSP studies, genes underlying familial dementias, and genes nominated by genome‐wide association studies. Gene set enrichment analyses of each list identified enriched pathways. RESULTS: The genes prioritized by the ADSP, familial dementia studies, and genome‐wide association studies minimally overlapped. Each gene set identified dozens of enriched pathways, several of which were shared (e.g., regulation of amyloid beta clearance). DISCUSSION: Alternative study designs provide unique insights into AD genetics. Shared pathways enriched by different genes highlight their relevance to AD pathogenesis, while the patterns of pathway enrichment unique to each gene set provide additional targets for functional studies. |
format | Online Article Text |
id | pubmed-8720139 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-87201392022-01-07 Large‐scale sequencing studies expand the known genetic architecture of Alzheimer's disease Xue, Diane Bush, William S. Renton, Alan E. Marcora, Edoardo A. Bis, Joshua C. Kunkle, Brian W. Boerwinkle, Eric DeStefano, Anita L. Farrer, Lindsay Goate, Alison Mayeux, Richard Pericak‐Vance, Margaret Schellenberg, Gerard Seshadri, Sudha Wijsman, Ellen Haines, Jonathan L. Blue, Elizabeth E. Alzheimers Dement (Amst) Genetics INTRODUCTION: Genes implicated by genome‐wide association studies and family‐based studies of Alzheimer's disease (AD) are largely discordant. We hypothesized that genes identified by sequencing studies like the Alzheimer's Disease Sequencing Project (ADSP) may bridge this gap and highlight shared biological mechanisms. METHODS: We performed structured literature review of genes prioritized by ADSP studies, genes underlying familial dementias, and genes nominated by genome‐wide association studies. Gene set enrichment analyses of each list identified enriched pathways. RESULTS: The genes prioritized by the ADSP, familial dementia studies, and genome‐wide association studies minimally overlapped. Each gene set identified dozens of enriched pathways, several of which were shared (e.g., regulation of amyloid beta clearance). DISCUSSION: Alternative study designs provide unique insights into AD genetics. Shared pathways enriched by different genes highlight their relevance to AD pathogenesis, while the patterns of pathway enrichment unique to each gene set provide additional targets for functional studies. John Wiley and Sons Inc. 2021-12-31 /pmc/articles/PMC8720139/ /pubmed/35005195 http://dx.doi.org/10.1002/dad2.12255 Text en © 2021 The Authors. Alzheimer's & Dementia: Diagnosis, Assessment & Disease Monitoring published by Wiley Periodicals LLC on behalf of Alzheimer's Association. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Genetics Xue, Diane Bush, William S. Renton, Alan E. Marcora, Edoardo A. Bis, Joshua C. Kunkle, Brian W. Boerwinkle, Eric DeStefano, Anita L. Farrer, Lindsay Goate, Alison Mayeux, Richard Pericak‐Vance, Margaret Schellenberg, Gerard Seshadri, Sudha Wijsman, Ellen Haines, Jonathan L. Blue, Elizabeth E. Large‐scale sequencing studies expand the known genetic architecture of Alzheimer's disease |
title | Large‐scale sequencing studies expand the known genetic architecture of Alzheimer's disease |
title_full | Large‐scale sequencing studies expand the known genetic architecture of Alzheimer's disease |
title_fullStr | Large‐scale sequencing studies expand the known genetic architecture of Alzheimer's disease |
title_full_unstemmed | Large‐scale sequencing studies expand the known genetic architecture of Alzheimer's disease |
title_short | Large‐scale sequencing studies expand the known genetic architecture of Alzheimer's disease |
title_sort | large‐scale sequencing studies expand the known genetic architecture of alzheimer's disease |
topic | Genetics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8720139/ https://www.ncbi.nlm.nih.gov/pubmed/35005195 http://dx.doi.org/10.1002/dad2.12255 |
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