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COVID-19 detection from CT scans using a two-stage framework

Coronavirus disease 2019 (COVID-19) is a contagious disease caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). It may cause serious ailments in infected individuals and complications may lead to death. X-rays and Computed Tomography (CT) scans can be used for the diagnosis of th...

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Autores principales: Basu, Arpan, Sheikh, Khalid Hassan, Cuevas, Erik, Sarkar, Ram
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier Ltd. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8720180/
https://www.ncbi.nlm.nih.gov/pubmed/35002099
http://dx.doi.org/10.1016/j.eswa.2021.116377
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author Basu, Arpan
Sheikh, Khalid Hassan
Cuevas, Erik
Sarkar, Ram
author_facet Basu, Arpan
Sheikh, Khalid Hassan
Cuevas, Erik
Sarkar, Ram
author_sort Basu, Arpan
collection PubMed
description Coronavirus disease 2019 (COVID-19) is a contagious disease caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). It may cause serious ailments in infected individuals and complications may lead to death. X-rays and Computed Tomography (CT) scans can be used for the diagnosis of the disease. In this context, various methods have been proposed for the detection of COVID-19 from radiological images. In this work, we propose an end-to-end framework consisting of deep feature extraction followed by feature selection (FS) for the detection of COVID-19 from CT scan images. For feature extraction, we utilize three deep learning based Convolutional Neural Networks (CNNs). For FS, we use a meta-heuristic optimization algorithm, Harmony Search (HS), combined with a local search method, Adaptive [Formula: see text]-Hill Climbing (A [Formula: see text] HC) for better performance. We evaluate the proposed approach on the SARS-COV-2 CT-Scan Dataset consisting of 2482 CT scan images and an updated version of the previous dataset containing 2926 CT scan images. For comparison, we use a few state-of-the-art optimization algorithms. The best accuracy scores obtained by the present approach are 97.30% and 98.87% respectively on the said datasets, which are better than many of the algorithms used for comparison. The performances are also at par with some recent works which use the same datasets. The codes for the FS algorithms are available at: https://github.com/khalid0007/Metaheuristic-Algorithms.
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spelling pubmed-87201802022-01-03 COVID-19 detection from CT scans using a two-stage framework Basu, Arpan Sheikh, Khalid Hassan Cuevas, Erik Sarkar, Ram Expert Syst Appl Article Coronavirus disease 2019 (COVID-19) is a contagious disease caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). It may cause serious ailments in infected individuals and complications may lead to death. X-rays and Computed Tomography (CT) scans can be used for the diagnosis of the disease. In this context, various methods have been proposed for the detection of COVID-19 from radiological images. In this work, we propose an end-to-end framework consisting of deep feature extraction followed by feature selection (FS) for the detection of COVID-19 from CT scan images. For feature extraction, we utilize three deep learning based Convolutional Neural Networks (CNNs). For FS, we use a meta-heuristic optimization algorithm, Harmony Search (HS), combined with a local search method, Adaptive [Formula: see text]-Hill Climbing (A [Formula: see text] HC) for better performance. We evaluate the proposed approach on the SARS-COV-2 CT-Scan Dataset consisting of 2482 CT scan images and an updated version of the previous dataset containing 2926 CT scan images. For comparison, we use a few state-of-the-art optimization algorithms. The best accuracy scores obtained by the present approach are 97.30% and 98.87% respectively on the said datasets, which are better than many of the algorithms used for comparison. The performances are also at par with some recent works which use the same datasets. The codes for the FS algorithms are available at: https://github.com/khalid0007/Metaheuristic-Algorithms. Elsevier Ltd. 2022-05-01 2022-01-01 /pmc/articles/PMC8720180/ /pubmed/35002099 http://dx.doi.org/10.1016/j.eswa.2021.116377 Text en © 2021 Elsevier Ltd. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Article
Basu, Arpan
Sheikh, Khalid Hassan
Cuevas, Erik
Sarkar, Ram
COVID-19 detection from CT scans using a two-stage framework
title COVID-19 detection from CT scans using a two-stage framework
title_full COVID-19 detection from CT scans using a two-stage framework
title_fullStr COVID-19 detection from CT scans using a two-stage framework
title_full_unstemmed COVID-19 detection from CT scans using a two-stage framework
title_short COVID-19 detection from CT scans using a two-stage framework
title_sort covid-19 detection from ct scans using a two-stage framework
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8720180/
https://www.ncbi.nlm.nih.gov/pubmed/35002099
http://dx.doi.org/10.1016/j.eswa.2021.116377
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AT sarkarram covid19detectionfromctscansusingatwostageframework