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Prognostic Value of an Immune-Related Gene Signature in Oral Squamous Cell Carcinoma
The prognosis and immunotherapy response rates are unfavorable in patients with oral squamous cell carcinoma (OSCC). The tumor microenvironment is associated with tumor prognosis and progression, and the underlying mechanisms remain unclear. We obtained differentially expressed immune-related genes...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8724436/ https://www.ncbi.nlm.nih.gov/pubmed/34993138 http://dx.doi.org/10.3389/fonc.2021.776979 |
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author | Zhu, Chao Gu, Liqun Yao, Mianfeng Li, Jiang Fang, Changyun |
author_facet | Zhu, Chao Gu, Liqun Yao, Mianfeng Li, Jiang Fang, Changyun |
author_sort | Zhu, Chao |
collection | PubMed |
description | The prognosis and immunotherapy response rates are unfavorable in patients with oral squamous cell carcinoma (OSCC). The tumor microenvironment is associated with tumor prognosis and progression, and the underlying mechanisms remain unclear. We obtained differentially expressed immune-related genes from OSCC mRNA data in The Cancer Genome Atlas (TCGA) database. Overall survival-related risk signature was constructed by univariate Cox regression analysis and LASSO Cox regression analysis. The prognostic performance was validated with receiver operating characteristic (ROC) analysis and Kaplan–Meier survival curves in the TCGA and Gene Expression Omnibus (GEO) datasets. The risk score was confirmed to be an independent prognostic factor and a nomogram was built to quantify the risk of outcome for each patient. Furthermore, a negative correlation was observed between the risk score and the infiltration rate of immune cells, as well as the expression of immunostimulatory and immunosuppressive molecules. Functional enrichment analysis between different risk score subtypes detected multiple immune-related biological processes, metabolic pathways, and cancer-related pathways. Thus, the immune-related gene signature can predict overall survival and contribute to the personalized management of OSCC patients. |
format | Online Article Text |
id | pubmed-8724436 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-87244362022-01-05 Prognostic Value of an Immune-Related Gene Signature in Oral Squamous Cell Carcinoma Zhu, Chao Gu, Liqun Yao, Mianfeng Li, Jiang Fang, Changyun Front Oncol Oncology The prognosis and immunotherapy response rates are unfavorable in patients with oral squamous cell carcinoma (OSCC). The tumor microenvironment is associated with tumor prognosis and progression, and the underlying mechanisms remain unclear. We obtained differentially expressed immune-related genes from OSCC mRNA data in The Cancer Genome Atlas (TCGA) database. Overall survival-related risk signature was constructed by univariate Cox regression analysis and LASSO Cox regression analysis. The prognostic performance was validated with receiver operating characteristic (ROC) analysis and Kaplan–Meier survival curves in the TCGA and Gene Expression Omnibus (GEO) datasets. The risk score was confirmed to be an independent prognostic factor and a nomogram was built to quantify the risk of outcome for each patient. Furthermore, a negative correlation was observed between the risk score and the infiltration rate of immune cells, as well as the expression of immunostimulatory and immunosuppressive molecules. Functional enrichment analysis between different risk score subtypes detected multiple immune-related biological processes, metabolic pathways, and cancer-related pathways. Thus, the immune-related gene signature can predict overall survival and contribute to the personalized management of OSCC patients. Frontiers Media S.A. 2021-12-21 /pmc/articles/PMC8724436/ /pubmed/34993138 http://dx.doi.org/10.3389/fonc.2021.776979 Text en Copyright © 2021 Zhu, Gu, Yao, Li and Fang https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Oncology Zhu, Chao Gu, Liqun Yao, Mianfeng Li, Jiang Fang, Changyun Prognostic Value of an Immune-Related Gene Signature in Oral Squamous Cell Carcinoma |
title | Prognostic Value of an Immune-Related Gene Signature in Oral Squamous Cell Carcinoma |
title_full | Prognostic Value of an Immune-Related Gene Signature in Oral Squamous Cell Carcinoma |
title_fullStr | Prognostic Value of an Immune-Related Gene Signature in Oral Squamous Cell Carcinoma |
title_full_unstemmed | Prognostic Value of an Immune-Related Gene Signature in Oral Squamous Cell Carcinoma |
title_short | Prognostic Value of an Immune-Related Gene Signature in Oral Squamous Cell Carcinoma |
title_sort | prognostic value of an immune-related gene signature in oral squamous cell carcinoma |
topic | Oncology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8724436/ https://www.ncbi.nlm.nih.gov/pubmed/34993138 http://dx.doi.org/10.3389/fonc.2021.776979 |
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