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Complete genome sequence data of tropical thermophilic bacterium Parageobacillus caldoxylosilyticus ER4B

Parageobacillus caldoxylosilyticus, or previously identified as Geobacillus caldoxylosilyticus, is a thermophilic Gram-positive bacterium which can easily withstand growth temperatures ranging from 40 °C to 70 °C. Here, we present the first complete genome sequence of Parageobacillus caldoxylosilyti...

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Autores principales: Ching, Xin Jie, Najimudin, Nazalan, Cheah, Yoke Kqueen, Wong, Clemente Michael Vui Ling
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8724967/
https://www.ncbi.nlm.nih.gov/pubmed/35024395
http://dx.doi.org/10.1016/j.dib.2021.107764
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author Ching, Xin Jie
Najimudin, Nazalan
Cheah, Yoke Kqueen
Wong, Clemente Michael Vui Ling
author_facet Ching, Xin Jie
Najimudin, Nazalan
Cheah, Yoke Kqueen
Wong, Clemente Michael Vui Ling
author_sort Ching, Xin Jie
collection PubMed
description Parageobacillus caldoxylosilyticus, or previously identified as Geobacillus caldoxylosilyticus, is a thermophilic Gram-positive bacterium which can easily withstand growth temperatures ranging from 40 °C to 70 °C. Here, we present the first complete genome sequence of Parageobacillus caldoxylosilyticus ER4B which was isolated from an empty oil palm fruit bunch compost in Malaysia. Whole genome sequencing was performed using the PacBio RSII platform. The genome size of strain ER4B was around 3.9Mbp, with GC content of 44.31%. The genome consists of two contigs, in which the larger contig (3,909,276bp) represents the chromosome, while the smaller one (54,250bp) represents the plasmid. A total of 4,164 genes were successfully predicted, including 3,972 protein coding sequences, 26 rRNAs, 91 tRNAs, 74 miscRNA, and 1 tmRNA. The genome sequence data of strain ER4B reported here may contribute to the current molecular information of the species. It may also facilitate the discovery of molecular traits related to thermal stress, thus, expanding our understanding in the acclimation or adaptation towards extreme temperature in bacteria.
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spelling pubmed-87249672022-01-11 Complete genome sequence data of tropical thermophilic bacterium Parageobacillus caldoxylosilyticus ER4B Ching, Xin Jie Najimudin, Nazalan Cheah, Yoke Kqueen Wong, Clemente Michael Vui Ling Data Brief Data Article Parageobacillus caldoxylosilyticus, or previously identified as Geobacillus caldoxylosilyticus, is a thermophilic Gram-positive bacterium which can easily withstand growth temperatures ranging from 40 °C to 70 °C. Here, we present the first complete genome sequence of Parageobacillus caldoxylosilyticus ER4B which was isolated from an empty oil palm fruit bunch compost in Malaysia. Whole genome sequencing was performed using the PacBio RSII platform. The genome size of strain ER4B was around 3.9Mbp, with GC content of 44.31%. The genome consists of two contigs, in which the larger contig (3,909,276bp) represents the chromosome, while the smaller one (54,250bp) represents the plasmid. A total of 4,164 genes were successfully predicted, including 3,972 protein coding sequences, 26 rRNAs, 91 tRNAs, 74 miscRNA, and 1 tmRNA. The genome sequence data of strain ER4B reported here may contribute to the current molecular information of the species. It may also facilitate the discovery of molecular traits related to thermal stress, thus, expanding our understanding in the acclimation or adaptation towards extreme temperature in bacteria. Elsevier 2021-12-25 /pmc/articles/PMC8724967/ /pubmed/35024395 http://dx.doi.org/10.1016/j.dib.2021.107764 Text en © 2021 The Authors. Published by Elsevier Inc. https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Data Article
Ching, Xin Jie
Najimudin, Nazalan
Cheah, Yoke Kqueen
Wong, Clemente Michael Vui Ling
Complete genome sequence data of tropical thermophilic bacterium Parageobacillus caldoxylosilyticus ER4B
title Complete genome sequence data of tropical thermophilic bacterium Parageobacillus caldoxylosilyticus ER4B
title_full Complete genome sequence data of tropical thermophilic bacterium Parageobacillus caldoxylosilyticus ER4B
title_fullStr Complete genome sequence data of tropical thermophilic bacterium Parageobacillus caldoxylosilyticus ER4B
title_full_unstemmed Complete genome sequence data of tropical thermophilic bacterium Parageobacillus caldoxylosilyticus ER4B
title_short Complete genome sequence data of tropical thermophilic bacterium Parageobacillus caldoxylosilyticus ER4B
title_sort complete genome sequence data of tropical thermophilic bacterium parageobacillus caldoxylosilyticus er4b
topic Data Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8724967/
https://www.ncbi.nlm.nih.gov/pubmed/35024395
http://dx.doi.org/10.1016/j.dib.2021.107764
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