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Characterization of the chloroplast genome of Meterostachys sikokianus (Makino) Nakai (Crassulaceae) and its phylogenetic analysis

Meterostachys is a monotypic genus of Crassulaceae, though its phylogenetic position remains unclear. Here, we report the complete chloroplast (cp) genome sequence of Meterostachys sikokianus using the Illumina high-throughput sequencing approach. The cp genome was 149,860 bp in length, containing a...

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Autores principales: Kang, Halam, Kim, Bo-Yun, Lee, Ha-Rim, Park, Yoo-Jung, Kim, Kyung-Ah, Cheon, Kyeong-Sik
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8725941/
https://www.ncbi.nlm.nih.gov/pubmed/34993311
http://dx.doi.org/10.1080/23802359.2021.2008837
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author Kang, Halam
Kim, Bo-Yun
Lee, Ha-Rim
Park, Yoo-Jung
Kim, Kyung-Ah
Cheon, Kyeong-Sik
author_facet Kang, Halam
Kim, Bo-Yun
Lee, Ha-Rim
Park, Yoo-Jung
Kim, Kyung-Ah
Cheon, Kyeong-Sik
author_sort Kang, Halam
collection PubMed
description Meterostachys is a monotypic genus of Crassulaceae, though its phylogenetic position remains unclear. Here, we report the complete chloroplast (cp) genome sequence of Meterostachys sikokianus using the Illumina high-throughput sequencing approach. The cp genome was 149,860 bp in length, containing a large single copy (LSC) of 82,293 bp and a small single copy (SSC) of 16,879 bp, which were separated by a pair of 25,344 bp inverted repeats (IRs). The overall GC content of the M. sikokianus cp genome was 37.6%. A total of 113 unique genes were annotated, consisting of 79 protein coding genes (PCGs), 30 transfer RNAs (tRNAs), and four ribosomal RNAs (rRNAs). Among these genes, eighteen contained one or two introns. A maximum-likelihood (ML) phylogenetic analysis based on 30 accessions of Crassulaceae showed that M. sikokianus was most closely related to Orostachys japonica and Orostachys fimbriata.
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spelling pubmed-87259412022-01-05 Characterization of the chloroplast genome of Meterostachys sikokianus (Makino) Nakai (Crassulaceae) and its phylogenetic analysis Kang, Halam Kim, Bo-Yun Lee, Ha-Rim Park, Yoo-Jung Kim, Kyung-Ah Cheon, Kyeong-Sik Mitochondrial DNA B Resour Rapid Communication Meterostachys is a monotypic genus of Crassulaceae, though its phylogenetic position remains unclear. Here, we report the complete chloroplast (cp) genome sequence of Meterostachys sikokianus using the Illumina high-throughput sequencing approach. The cp genome was 149,860 bp in length, containing a large single copy (LSC) of 82,293 bp and a small single copy (SSC) of 16,879 bp, which were separated by a pair of 25,344 bp inverted repeats (IRs). The overall GC content of the M. sikokianus cp genome was 37.6%. A total of 113 unique genes were annotated, consisting of 79 protein coding genes (PCGs), 30 transfer RNAs (tRNAs), and four ribosomal RNAs (rRNAs). Among these genes, eighteen contained one or two introns. A maximum-likelihood (ML) phylogenetic analysis based on 30 accessions of Crassulaceae showed that M. sikokianus was most closely related to Orostachys japonica and Orostachys fimbriata. Taylor & Francis 2021-12-17 /pmc/articles/PMC8725941/ /pubmed/34993311 http://dx.doi.org/10.1080/23802359.2021.2008837 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Rapid Communication
Kang, Halam
Kim, Bo-Yun
Lee, Ha-Rim
Park, Yoo-Jung
Kim, Kyung-Ah
Cheon, Kyeong-Sik
Characterization of the chloroplast genome of Meterostachys sikokianus (Makino) Nakai (Crassulaceae) and its phylogenetic analysis
title Characterization of the chloroplast genome of Meterostachys sikokianus (Makino) Nakai (Crassulaceae) and its phylogenetic analysis
title_full Characterization of the chloroplast genome of Meterostachys sikokianus (Makino) Nakai (Crassulaceae) and its phylogenetic analysis
title_fullStr Characterization of the chloroplast genome of Meterostachys sikokianus (Makino) Nakai (Crassulaceae) and its phylogenetic analysis
title_full_unstemmed Characterization of the chloroplast genome of Meterostachys sikokianus (Makino) Nakai (Crassulaceae) and its phylogenetic analysis
title_short Characterization of the chloroplast genome of Meterostachys sikokianus (Makino) Nakai (Crassulaceae) and its phylogenetic analysis
title_sort characterization of the chloroplast genome of meterostachys sikokianus (makino) nakai (crassulaceae) and its phylogenetic analysis
topic Rapid Communication
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8725941/
https://www.ncbi.nlm.nih.gov/pubmed/34993311
http://dx.doi.org/10.1080/23802359.2021.2008837
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