Cargando…
Characterization of the chloroplast genome of Meterostachys sikokianus (Makino) Nakai (Crassulaceae) and its phylogenetic analysis
Meterostachys is a monotypic genus of Crassulaceae, though its phylogenetic position remains unclear. Here, we report the complete chloroplast (cp) genome sequence of Meterostachys sikokianus using the Illumina high-throughput sequencing approach. The cp genome was 149,860 bp in length, containing a...
Autores principales: | , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2021
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8725941/ https://www.ncbi.nlm.nih.gov/pubmed/34993311 http://dx.doi.org/10.1080/23802359.2021.2008837 |
_version_ | 1784626220410863616 |
---|---|
author | Kang, Halam Kim, Bo-Yun Lee, Ha-Rim Park, Yoo-Jung Kim, Kyung-Ah Cheon, Kyeong-Sik |
author_facet | Kang, Halam Kim, Bo-Yun Lee, Ha-Rim Park, Yoo-Jung Kim, Kyung-Ah Cheon, Kyeong-Sik |
author_sort | Kang, Halam |
collection | PubMed |
description | Meterostachys is a monotypic genus of Crassulaceae, though its phylogenetic position remains unclear. Here, we report the complete chloroplast (cp) genome sequence of Meterostachys sikokianus using the Illumina high-throughput sequencing approach. The cp genome was 149,860 bp in length, containing a large single copy (LSC) of 82,293 bp and a small single copy (SSC) of 16,879 bp, which were separated by a pair of 25,344 bp inverted repeats (IRs). The overall GC content of the M. sikokianus cp genome was 37.6%. A total of 113 unique genes were annotated, consisting of 79 protein coding genes (PCGs), 30 transfer RNAs (tRNAs), and four ribosomal RNAs (rRNAs). Among these genes, eighteen contained one or two introns. A maximum-likelihood (ML) phylogenetic analysis based on 30 accessions of Crassulaceae showed that M. sikokianus was most closely related to Orostachys japonica and Orostachys fimbriata. |
format | Online Article Text |
id | pubmed-8725941 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-87259412022-01-05 Characterization of the chloroplast genome of Meterostachys sikokianus (Makino) Nakai (Crassulaceae) and its phylogenetic analysis Kang, Halam Kim, Bo-Yun Lee, Ha-Rim Park, Yoo-Jung Kim, Kyung-Ah Cheon, Kyeong-Sik Mitochondrial DNA B Resour Rapid Communication Meterostachys is a monotypic genus of Crassulaceae, though its phylogenetic position remains unclear. Here, we report the complete chloroplast (cp) genome sequence of Meterostachys sikokianus using the Illumina high-throughput sequencing approach. The cp genome was 149,860 bp in length, containing a large single copy (LSC) of 82,293 bp and a small single copy (SSC) of 16,879 bp, which were separated by a pair of 25,344 bp inverted repeats (IRs). The overall GC content of the M. sikokianus cp genome was 37.6%. A total of 113 unique genes were annotated, consisting of 79 protein coding genes (PCGs), 30 transfer RNAs (tRNAs), and four ribosomal RNAs (rRNAs). Among these genes, eighteen contained one or two introns. A maximum-likelihood (ML) phylogenetic analysis based on 30 accessions of Crassulaceae showed that M. sikokianus was most closely related to Orostachys japonica and Orostachys fimbriata. Taylor & Francis 2021-12-17 /pmc/articles/PMC8725941/ /pubmed/34993311 http://dx.doi.org/10.1080/23802359.2021.2008837 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Rapid Communication Kang, Halam Kim, Bo-Yun Lee, Ha-Rim Park, Yoo-Jung Kim, Kyung-Ah Cheon, Kyeong-Sik Characterization of the chloroplast genome of Meterostachys sikokianus (Makino) Nakai (Crassulaceae) and its phylogenetic analysis |
title | Characterization of the chloroplast genome of Meterostachys sikokianus (Makino) Nakai (Crassulaceae) and its phylogenetic analysis |
title_full | Characterization of the chloroplast genome of Meterostachys sikokianus (Makino) Nakai (Crassulaceae) and its phylogenetic analysis |
title_fullStr | Characterization of the chloroplast genome of Meterostachys sikokianus (Makino) Nakai (Crassulaceae) and its phylogenetic analysis |
title_full_unstemmed | Characterization of the chloroplast genome of Meterostachys sikokianus (Makino) Nakai (Crassulaceae) and its phylogenetic analysis |
title_short | Characterization of the chloroplast genome of Meterostachys sikokianus (Makino) Nakai (Crassulaceae) and its phylogenetic analysis |
title_sort | characterization of the chloroplast genome of meterostachys sikokianus (makino) nakai (crassulaceae) and its phylogenetic analysis |
topic | Rapid Communication |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8725941/ https://www.ncbi.nlm.nih.gov/pubmed/34993311 http://dx.doi.org/10.1080/23802359.2021.2008837 |
work_keys_str_mv | AT kanghalam characterizationofthechloroplastgenomeofmeterostachyssikokianusmakinonakaicrassulaceaeanditsphylogeneticanalysis AT kimboyun characterizationofthechloroplastgenomeofmeterostachyssikokianusmakinonakaicrassulaceaeanditsphylogeneticanalysis AT leeharim characterizationofthechloroplastgenomeofmeterostachyssikokianusmakinonakaicrassulaceaeanditsphylogeneticanalysis AT parkyoojung characterizationofthechloroplastgenomeofmeterostachyssikokianusmakinonakaicrassulaceaeanditsphylogeneticanalysis AT kimkyungah characterizationofthechloroplastgenomeofmeterostachyssikokianusmakinonakaicrassulaceaeanditsphylogeneticanalysis AT cheonkyeongsik characterizationofthechloroplastgenomeofmeterostachyssikokianusmakinonakaicrassulaceaeanditsphylogeneticanalysis |