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A data mining based clinical decision support system for survival in lung cancer

BACKGROUND: A clinical decision support system (CDSS ) has been designed to predict the outcome (overall survival) by extracting and analyzing information from routine clinical activity as a complement to clinical guidelines in lung cancer patients. MATERIALS AND METHODS: Prospective multicenter dat...

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Autores principales: Pontes, Beatriz, Núñez, Francisco, Rubio, Cristina, Moreno, Alberto, Nepomuceno, Isabel, Moreno, Jesús, Cacicedo, Jon, Praena-Fernandez, Juan Manuel, Rodriguez, German Antonio Escobar, Parra, Carlos, León, Blas David Delgado, del Campo, Eleonor Rivin, Couñago, Felipe, Riquelme, Jose, Guerra, Jose Luis Lopez
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Via Medica 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8726446/
https://www.ncbi.nlm.nih.gov/pubmed/34992855
http://dx.doi.org/10.5603/RPOR.a2021.0088
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author Pontes, Beatriz
Núñez, Francisco
Rubio, Cristina
Moreno, Alberto
Nepomuceno, Isabel
Moreno, Jesús
Cacicedo, Jon
Praena-Fernandez, Juan Manuel
Rodriguez, German Antonio Escobar
Parra, Carlos
León, Blas David Delgado
del Campo, Eleonor Rivin
Couñago, Felipe
Riquelme, Jose
Guerra, Jose Luis Lopez
author_facet Pontes, Beatriz
Núñez, Francisco
Rubio, Cristina
Moreno, Alberto
Nepomuceno, Isabel
Moreno, Jesús
Cacicedo, Jon
Praena-Fernandez, Juan Manuel
Rodriguez, German Antonio Escobar
Parra, Carlos
León, Blas David Delgado
del Campo, Eleonor Rivin
Couñago, Felipe
Riquelme, Jose
Guerra, Jose Luis Lopez
author_sort Pontes, Beatriz
collection PubMed
description BACKGROUND: A clinical decision support system (CDSS ) has been designed to predict the outcome (overall survival) by extracting and analyzing information from routine clinical activity as a complement to clinical guidelines in lung cancer patients. MATERIALS AND METHODS: Prospective multicenter data from 543 consecutive (2013–2017) lung cancer patients with 1167 variables were used for development of the CDSS. Data Mining analyses were based on the XGBoost and Generalized Linear Models algorithms. The predictions from guidelines and the CDSS proposed were compared. RESULTS: Overall, the highest (> 0.90) areas under the receiver-operating characteristics curve AUCs for predicting survival were obtained for small cell lung cancer patients. The AUCs for predicting survival using basic items included in the guidelines were mostly below 0.70 while those obtained using the CDSS were mostly above 0.70. The vast majority of comparisons between the guideline and CDSS AUCs were statistically significant (p < 0.05). For instance, using the guidelines, the AUC for predicting survival was 0.60 while the predictive power of the CDSS enhanced the AUC up to 0.84 (p = 0.0009). In terms of histology, there was only a statistically significant difference when comparing the AUCs of small cell lung cancer patients (0.96) and all lung cancer patients with longer (≥ 18 months) follow up (0.80; p < 0.001). CONCLUSIONS: The CDSS successfully showed potential for enhancing prediction of survival. The CDSS could assist physicians in formulating evidence-based management advice in patients with lung cancer, guiding an individualized discussion according to prognosis.
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spelling pubmed-87264462022-01-05 A data mining based clinical decision support system for survival in lung cancer Pontes, Beatriz Núñez, Francisco Rubio, Cristina Moreno, Alberto Nepomuceno, Isabel Moreno, Jesús Cacicedo, Jon Praena-Fernandez, Juan Manuel Rodriguez, German Antonio Escobar Parra, Carlos León, Blas David Delgado del Campo, Eleonor Rivin Couñago, Felipe Riquelme, Jose Guerra, Jose Luis Lopez Rep Pract Oncol Radiother Research Paper BACKGROUND: A clinical decision support system (CDSS ) has been designed to predict the outcome (overall survival) by extracting and analyzing information from routine clinical activity as a complement to clinical guidelines in lung cancer patients. MATERIALS AND METHODS: Prospective multicenter data from 543 consecutive (2013–2017) lung cancer patients with 1167 variables were used for development of the CDSS. Data Mining analyses were based on the XGBoost and Generalized Linear Models algorithms. The predictions from guidelines and the CDSS proposed were compared. RESULTS: Overall, the highest (> 0.90) areas under the receiver-operating characteristics curve AUCs for predicting survival were obtained for small cell lung cancer patients. The AUCs for predicting survival using basic items included in the guidelines were mostly below 0.70 while those obtained using the CDSS were mostly above 0.70. The vast majority of comparisons between the guideline and CDSS AUCs were statistically significant (p < 0.05). For instance, using the guidelines, the AUC for predicting survival was 0.60 while the predictive power of the CDSS enhanced the AUC up to 0.84 (p = 0.0009). In terms of histology, there was only a statistically significant difference when comparing the AUCs of small cell lung cancer patients (0.96) and all lung cancer patients with longer (≥ 18 months) follow up (0.80; p < 0.001). CONCLUSIONS: The CDSS successfully showed potential for enhancing prediction of survival. The CDSS could assist physicians in formulating evidence-based management advice in patients with lung cancer, guiding an individualized discussion according to prognosis. Via Medica 2021-12-30 /pmc/articles/PMC8726446/ /pubmed/34992855 http://dx.doi.org/10.5603/RPOR.a2021.0088 Text en © 2021 Greater Poland Cancer Centre https://creativecommons.org/licenses/by-nc-nd/4.0/This article is available in open access under Creative Common Attribution-Non-Commercial-No Derivatives 4.0 International (CC BY-NC-ND 4.0) license, allowing to download articles and share them with others as long as they credit the authors and the publisher, but without permission to change them in any way or use them commercially
spellingShingle Research Paper
Pontes, Beatriz
Núñez, Francisco
Rubio, Cristina
Moreno, Alberto
Nepomuceno, Isabel
Moreno, Jesús
Cacicedo, Jon
Praena-Fernandez, Juan Manuel
Rodriguez, German Antonio Escobar
Parra, Carlos
León, Blas David Delgado
del Campo, Eleonor Rivin
Couñago, Felipe
Riquelme, Jose
Guerra, Jose Luis Lopez
A data mining based clinical decision support system for survival in lung cancer
title A data mining based clinical decision support system for survival in lung cancer
title_full A data mining based clinical decision support system for survival in lung cancer
title_fullStr A data mining based clinical decision support system for survival in lung cancer
title_full_unstemmed A data mining based clinical decision support system for survival in lung cancer
title_short A data mining based clinical decision support system for survival in lung cancer
title_sort data mining based clinical decision support system for survival in lung cancer
topic Research Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8726446/
https://www.ncbi.nlm.nih.gov/pubmed/34992855
http://dx.doi.org/10.5603/RPOR.a2021.0088
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