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RNAPhaSep: a resource of RNAs undergoing phase separation
Liquid-liquid phase separation (LLPS) partitions cellular contents, underlies the formation of membraneless organelles and plays essential biological roles. To date, most of the research on LLPS has focused on proteins, especially RNA-binding proteins. However, accumulating evidence has demonstrated...
Autores principales: | , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8728120/ https://www.ncbi.nlm.nih.gov/pubmed/34718740 http://dx.doi.org/10.1093/nar/gkab985 |
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author | Zhu, Haibo Fu, Hao Cui, Tianyu Ning, Lin Shao, Huaguo Guo, Yehan Ke, Yanting Zheng, Jiayi Lin, Hongyan Wu, Xin Liu, Guanghao He, Jun Han, Xin Li, Wenlin Zhao, Xiaoyang Lu, Huasong Wang, Dong Hu, Kongfa Shen, Xiaopei |
author_facet | Zhu, Haibo Fu, Hao Cui, Tianyu Ning, Lin Shao, Huaguo Guo, Yehan Ke, Yanting Zheng, Jiayi Lin, Hongyan Wu, Xin Liu, Guanghao He, Jun Han, Xin Li, Wenlin Zhao, Xiaoyang Lu, Huasong Wang, Dong Hu, Kongfa Shen, Xiaopei |
author_sort | Zhu, Haibo |
collection | PubMed |
description | Liquid-liquid phase separation (LLPS) partitions cellular contents, underlies the formation of membraneless organelles and plays essential biological roles. To date, most of the research on LLPS has focused on proteins, especially RNA-binding proteins. However, accumulating evidence has demonstrated that RNAs can also function as ‘scaffolds’ and play essential roles in seeding or nucleating the formation of granules. To better utilize the knowledge dispersed in published literature, we here introduce RNAPhaSep (http://www.rnaphasep.cn), a manually curated database of RNAs undergoing LLPS. It contains 1113 entries with experimentally validated RNA self-assembly or RNA and protein co-involved phase separation events. RNAPhaSep contains various types of information, including RNA information, protein information, phase separation experiment information and integrated annotation from multiple databases. RNAPhaSep provides a valuable resource for exploring the relationship between RNA properties and phase behaviour, and may further enhance our comprehensive understanding of LLPS in cellular functions and human diseases. |
format | Online Article Text |
id | pubmed-8728120 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-87281202022-01-05 RNAPhaSep: a resource of RNAs undergoing phase separation Zhu, Haibo Fu, Hao Cui, Tianyu Ning, Lin Shao, Huaguo Guo, Yehan Ke, Yanting Zheng, Jiayi Lin, Hongyan Wu, Xin Liu, Guanghao He, Jun Han, Xin Li, Wenlin Zhao, Xiaoyang Lu, Huasong Wang, Dong Hu, Kongfa Shen, Xiaopei Nucleic Acids Res Database Issue Liquid-liquid phase separation (LLPS) partitions cellular contents, underlies the formation of membraneless organelles and plays essential biological roles. To date, most of the research on LLPS has focused on proteins, especially RNA-binding proteins. However, accumulating evidence has demonstrated that RNAs can also function as ‘scaffolds’ and play essential roles in seeding or nucleating the formation of granules. To better utilize the knowledge dispersed in published literature, we here introduce RNAPhaSep (http://www.rnaphasep.cn), a manually curated database of RNAs undergoing LLPS. It contains 1113 entries with experimentally validated RNA self-assembly or RNA and protein co-involved phase separation events. RNAPhaSep contains various types of information, including RNA information, protein information, phase separation experiment information and integrated annotation from multiple databases. RNAPhaSep provides a valuable resource for exploring the relationship between RNA properties and phase behaviour, and may further enhance our comprehensive understanding of LLPS in cellular functions and human diseases. Oxford University Press 2021-10-30 /pmc/articles/PMC8728120/ /pubmed/34718740 http://dx.doi.org/10.1093/nar/gkab985 Text en © The Author(s) 2021. Published by Oxford University Press on behalf of Nucleic Acids Research. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (https://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | Database Issue Zhu, Haibo Fu, Hao Cui, Tianyu Ning, Lin Shao, Huaguo Guo, Yehan Ke, Yanting Zheng, Jiayi Lin, Hongyan Wu, Xin Liu, Guanghao He, Jun Han, Xin Li, Wenlin Zhao, Xiaoyang Lu, Huasong Wang, Dong Hu, Kongfa Shen, Xiaopei RNAPhaSep: a resource of RNAs undergoing phase separation |
title | RNAPhaSep: a resource of RNAs undergoing phase separation |
title_full | RNAPhaSep: a resource of RNAs undergoing phase separation |
title_fullStr | RNAPhaSep: a resource of RNAs undergoing phase separation |
title_full_unstemmed | RNAPhaSep: a resource of RNAs undergoing phase separation |
title_short | RNAPhaSep: a resource of RNAs undergoing phase separation |
title_sort | rnaphasep: a resource of rnas undergoing phase separation |
topic | Database Issue |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8728120/ https://www.ncbi.nlm.nih.gov/pubmed/34718740 http://dx.doi.org/10.1093/nar/gkab985 |
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