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The UCSC Genome Browser database: 2022 update
The UCSC Genome Browser, https://genome.ucsc.edu, is a graphical viewer for exploring genome annotations. The website provides integrated tools for visualizing, comparing, analyzing, and sharing both publicly available and user-generated genomic datasets. Data highlights this year include a collecti...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8728131/ https://www.ncbi.nlm.nih.gov/pubmed/34718705 http://dx.doi.org/10.1093/nar/gkab959 |
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author | Lee, Brian T Barber, Galt P Benet-Pagès, Anna Casper, Jonathan Clawson, Hiram Diekhans, Mark Fischer, Clay Gonzalez, Jairo Navarro Hinrichs, Angie S Lee, Christopher M Muthuraman, Pranav Nassar, Luis R Nguy, Beagan Pereira, Tiana Perez, Gerardo Raney, Brian J Rosenbloom, Kate R Schmelter, Daniel Speir, Matthew L Wick, Brittney D Zweig, Ann S Haussler, David Kuhn, Robert M Haeussler, Maximilian Kent, W James |
author_facet | Lee, Brian T Barber, Galt P Benet-Pagès, Anna Casper, Jonathan Clawson, Hiram Diekhans, Mark Fischer, Clay Gonzalez, Jairo Navarro Hinrichs, Angie S Lee, Christopher M Muthuraman, Pranav Nassar, Luis R Nguy, Beagan Pereira, Tiana Perez, Gerardo Raney, Brian J Rosenbloom, Kate R Schmelter, Daniel Speir, Matthew L Wick, Brittney D Zweig, Ann S Haussler, David Kuhn, Robert M Haeussler, Maximilian Kent, W James |
author_sort | Lee, Brian T |
collection | PubMed |
description | The UCSC Genome Browser, https://genome.ucsc.edu, is a graphical viewer for exploring genome annotations. The website provides integrated tools for visualizing, comparing, analyzing, and sharing both publicly available and user-generated genomic datasets. Data highlights this year include a collection of easily accessible public hub assemblies on new organisms, now featuring BLAT alignment and PCR capabilities, and new and updated clinical tracks (gnomAD, DECIPHER, CADD, REVEL). We introduced a new Track Sets feature and enhanced variant displays to aid in the interpretation of clinical data. We also added a tool to rapidly place new SARS-CoV-2 genomes in a global phylogenetic tree enabling researchers to view the context of emerging mutations in our SARS-CoV-2 Genome Browser. Other new software focuses on usability features, including more informative mouseover displays and new fonts. |
format | Online Article Text |
id | pubmed-8728131 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-87281312022-01-05 The UCSC Genome Browser database: 2022 update Lee, Brian T Barber, Galt P Benet-Pagès, Anna Casper, Jonathan Clawson, Hiram Diekhans, Mark Fischer, Clay Gonzalez, Jairo Navarro Hinrichs, Angie S Lee, Christopher M Muthuraman, Pranav Nassar, Luis R Nguy, Beagan Pereira, Tiana Perez, Gerardo Raney, Brian J Rosenbloom, Kate R Schmelter, Daniel Speir, Matthew L Wick, Brittney D Zweig, Ann S Haussler, David Kuhn, Robert M Haeussler, Maximilian Kent, W James Nucleic Acids Res Database Issue The UCSC Genome Browser, https://genome.ucsc.edu, is a graphical viewer for exploring genome annotations. The website provides integrated tools for visualizing, comparing, analyzing, and sharing both publicly available and user-generated genomic datasets. Data highlights this year include a collection of easily accessible public hub assemblies on new organisms, now featuring BLAT alignment and PCR capabilities, and new and updated clinical tracks (gnomAD, DECIPHER, CADD, REVEL). We introduced a new Track Sets feature and enhanced variant displays to aid in the interpretation of clinical data. We also added a tool to rapidly place new SARS-CoV-2 genomes in a global phylogenetic tree enabling researchers to view the context of emerging mutations in our SARS-CoV-2 Genome Browser. Other new software focuses on usability features, including more informative mouseover displays and new fonts. Oxford University Press 2021-10-28 /pmc/articles/PMC8728131/ /pubmed/34718705 http://dx.doi.org/10.1093/nar/gkab959 Text en © The Author(s) 2021. Published by Oxford University Press on behalf of Nucleic Acids Research. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Database Issue Lee, Brian T Barber, Galt P Benet-Pagès, Anna Casper, Jonathan Clawson, Hiram Diekhans, Mark Fischer, Clay Gonzalez, Jairo Navarro Hinrichs, Angie S Lee, Christopher M Muthuraman, Pranav Nassar, Luis R Nguy, Beagan Pereira, Tiana Perez, Gerardo Raney, Brian J Rosenbloom, Kate R Schmelter, Daniel Speir, Matthew L Wick, Brittney D Zweig, Ann S Haussler, David Kuhn, Robert M Haeussler, Maximilian Kent, W James The UCSC Genome Browser database: 2022 update |
title | The UCSC Genome Browser database: 2022 update |
title_full | The UCSC Genome Browser database: 2022 update |
title_fullStr | The UCSC Genome Browser database: 2022 update |
title_full_unstemmed | The UCSC Genome Browser database: 2022 update |
title_short | The UCSC Genome Browser database: 2022 update |
title_sort | ucsc genome browser database: 2022 update |
topic | Database Issue |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8728131/ https://www.ncbi.nlm.nih.gov/pubmed/34718705 http://dx.doi.org/10.1093/nar/gkab959 |
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