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The UCSC Genome Browser database: 2022 update

The UCSC Genome Browser, https://genome.ucsc.edu, is a graphical viewer for exploring genome annotations. The website provides integrated tools for visualizing, comparing, analyzing, and sharing both publicly available and user-generated genomic datasets. Data highlights this year include a collecti...

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Autores principales: Lee, Brian T, Barber, Galt P, Benet-Pagès, Anna, Casper, Jonathan, Clawson, Hiram, Diekhans, Mark, Fischer, Clay, Gonzalez, Jairo Navarro, Hinrichs, Angie S, Lee, Christopher M, Muthuraman, Pranav, Nassar, Luis R, Nguy, Beagan, Pereira, Tiana, Perez, Gerardo, Raney, Brian J, Rosenbloom, Kate R, Schmelter, Daniel, Speir, Matthew L, Wick, Brittney D, Zweig, Ann S, Haussler, David, Kuhn, Robert M, Haeussler, Maximilian, Kent, W James
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8728131/
https://www.ncbi.nlm.nih.gov/pubmed/34718705
http://dx.doi.org/10.1093/nar/gkab959
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author Lee, Brian T
Barber, Galt P
Benet-Pagès, Anna
Casper, Jonathan
Clawson, Hiram
Diekhans, Mark
Fischer, Clay
Gonzalez, Jairo Navarro
Hinrichs, Angie S
Lee, Christopher M
Muthuraman, Pranav
Nassar, Luis R
Nguy, Beagan
Pereira, Tiana
Perez, Gerardo
Raney, Brian J
Rosenbloom, Kate R
Schmelter, Daniel
Speir, Matthew L
Wick, Brittney D
Zweig, Ann S
Haussler, David
Kuhn, Robert M
Haeussler, Maximilian
Kent, W James
author_facet Lee, Brian T
Barber, Galt P
Benet-Pagès, Anna
Casper, Jonathan
Clawson, Hiram
Diekhans, Mark
Fischer, Clay
Gonzalez, Jairo Navarro
Hinrichs, Angie S
Lee, Christopher M
Muthuraman, Pranav
Nassar, Luis R
Nguy, Beagan
Pereira, Tiana
Perez, Gerardo
Raney, Brian J
Rosenbloom, Kate R
Schmelter, Daniel
Speir, Matthew L
Wick, Brittney D
Zweig, Ann S
Haussler, David
Kuhn, Robert M
Haeussler, Maximilian
Kent, W James
author_sort Lee, Brian T
collection PubMed
description The UCSC Genome Browser, https://genome.ucsc.edu, is a graphical viewer for exploring genome annotations. The website provides integrated tools for visualizing, comparing, analyzing, and sharing both publicly available and user-generated genomic datasets. Data highlights this year include a collection of easily accessible public hub assemblies on new organisms, now featuring BLAT alignment and PCR capabilities, and new and updated clinical tracks (gnomAD, DECIPHER, CADD, REVEL). We introduced a new Track Sets feature and enhanced variant displays to aid in the interpretation of clinical data. We also added a tool to rapidly place new SARS-CoV-2 genomes in a global phylogenetic tree enabling researchers to view the context of emerging mutations in our SARS-CoV-2 Genome Browser. Other new software focuses on usability features, including more informative mouseover displays and new fonts.
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spelling pubmed-87281312022-01-05 The UCSC Genome Browser database: 2022 update Lee, Brian T Barber, Galt P Benet-Pagès, Anna Casper, Jonathan Clawson, Hiram Diekhans, Mark Fischer, Clay Gonzalez, Jairo Navarro Hinrichs, Angie S Lee, Christopher M Muthuraman, Pranav Nassar, Luis R Nguy, Beagan Pereira, Tiana Perez, Gerardo Raney, Brian J Rosenbloom, Kate R Schmelter, Daniel Speir, Matthew L Wick, Brittney D Zweig, Ann S Haussler, David Kuhn, Robert M Haeussler, Maximilian Kent, W James Nucleic Acids Res Database Issue The UCSC Genome Browser, https://genome.ucsc.edu, is a graphical viewer for exploring genome annotations. The website provides integrated tools for visualizing, comparing, analyzing, and sharing both publicly available and user-generated genomic datasets. Data highlights this year include a collection of easily accessible public hub assemblies on new organisms, now featuring BLAT alignment and PCR capabilities, and new and updated clinical tracks (gnomAD, DECIPHER, CADD, REVEL). We introduced a new Track Sets feature and enhanced variant displays to aid in the interpretation of clinical data. We also added a tool to rapidly place new SARS-CoV-2 genomes in a global phylogenetic tree enabling researchers to view the context of emerging mutations in our SARS-CoV-2 Genome Browser. Other new software focuses on usability features, including more informative mouseover displays and new fonts. Oxford University Press 2021-10-28 /pmc/articles/PMC8728131/ /pubmed/34718705 http://dx.doi.org/10.1093/nar/gkab959 Text en © The Author(s) 2021. Published by Oxford University Press on behalf of Nucleic Acids Research. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Database Issue
Lee, Brian T
Barber, Galt P
Benet-Pagès, Anna
Casper, Jonathan
Clawson, Hiram
Diekhans, Mark
Fischer, Clay
Gonzalez, Jairo Navarro
Hinrichs, Angie S
Lee, Christopher M
Muthuraman, Pranav
Nassar, Luis R
Nguy, Beagan
Pereira, Tiana
Perez, Gerardo
Raney, Brian J
Rosenbloom, Kate R
Schmelter, Daniel
Speir, Matthew L
Wick, Brittney D
Zweig, Ann S
Haussler, David
Kuhn, Robert M
Haeussler, Maximilian
Kent, W James
The UCSC Genome Browser database: 2022 update
title The UCSC Genome Browser database: 2022 update
title_full The UCSC Genome Browser database: 2022 update
title_fullStr The UCSC Genome Browser database: 2022 update
title_full_unstemmed The UCSC Genome Browser database: 2022 update
title_short The UCSC Genome Browser database: 2022 update
title_sort ucsc genome browser database: 2022 update
topic Database Issue
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8728131/
https://www.ncbi.nlm.nih.gov/pubmed/34718705
http://dx.doi.org/10.1093/nar/gkab959
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