Cargando…
piRBase: integrating piRNA annotation in all aspects
Piwi-interacting RNAs are a type of small noncoding RNA that have various functions. piRBase is a manually curated resource focused on assisting piRNA functional analysis. piRBase release v3.0 is committed to providing more comprehensive piRNA related information. The latest release covers >181 m...
Autores principales: | , , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2021
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8728152/ https://www.ncbi.nlm.nih.gov/pubmed/34871445 http://dx.doi.org/10.1093/nar/gkab1012 |
_version_ | 1784626672154181632 |
---|---|
author | Wang, Jiajia Shi, Yirong Zhou, Honghong Zhang, Peng Song, Tingrui Ying, Zhiye Yu, Haopeng Li, Yanyan Zhao, Yi Zeng, Xiaoxi He, Shunmin Chen, Runsheng |
author_facet | Wang, Jiajia Shi, Yirong Zhou, Honghong Zhang, Peng Song, Tingrui Ying, Zhiye Yu, Haopeng Li, Yanyan Zhao, Yi Zeng, Xiaoxi He, Shunmin Chen, Runsheng |
author_sort | Wang, Jiajia |
collection | PubMed |
description | Piwi-interacting RNAs are a type of small noncoding RNA that have various functions. piRBase is a manually curated resource focused on assisting piRNA functional analysis. piRBase release v3.0 is committed to providing more comprehensive piRNA related information. The latest release covers >181 million unique piRNA sequences, including 440 datasets from 44 species. More disease-related piRNAs and piRNA targets have been collected and displayed. The regulatory relationships between piRNAs and targets have been visualized. In addition to the reuse and expansion of the content in the previous version, the latest version has additional new content, including gold standard piRNA sets, piRNA clusters, piRNA variants, splicing-junction piRNAs, and piRNA expression data. In addition, the entire web interface has been redesigned to provide a better experience for users. piRBase release v3.0 is free to access, browse, search, and download at http://bigdata.ibp.ac.cn/piRBase. |
format | Online Article Text |
id | pubmed-8728152 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-87281522022-01-05 piRBase: integrating piRNA annotation in all aspects Wang, Jiajia Shi, Yirong Zhou, Honghong Zhang, Peng Song, Tingrui Ying, Zhiye Yu, Haopeng Li, Yanyan Zhao, Yi Zeng, Xiaoxi He, Shunmin Chen, Runsheng Nucleic Acids Res Database Issue Piwi-interacting RNAs are a type of small noncoding RNA that have various functions. piRBase is a manually curated resource focused on assisting piRNA functional analysis. piRBase release v3.0 is committed to providing more comprehensive piRNA related information. The latest release covers >181 million unique piRNA sequences, including 440 datasets from 44 species. More disease-related piRNAs and piRNA targets have been collected and displayed. The regulatory relationships between piRNAs and targets have been visualized. In addition to the reuse and expansion of the content in the previous version, the latest version has additional new content, including gold standard piRNA sets, piRNA clusters, piRNA variants, splicing-junction piRNAs, and piRNA expression data. In addition, the entire web interface has been redesigned to provide a better experience for users. piRBase release v3.0 is free to access, browse, search, and download at http://bigdata.ibp.ac.cn/piRBase. Oxford University Press 2021-12-06 /pmc/articles/PMC8728152/ /pubmed/34871445 http://dx.doi.org/10.1093/nar/gkab1012 Text en © The Author(s) 2021. Published by Oxford University Press on behalf of Nucleic Acids Research. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (https://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | Database Issue Wang, Jiajia Shi, Yirong Zhou, Honghong Zhang, Peng Song, Tingrui Ying, Zhiye Yu, Haopeng Li, Yanyan Zhao, Yi Zeng, Xiaoxi He, Shunmin Chen, Runsheng piRBase: integrating piRNA annotation in all aspects |
title | piRBase: integrating piRNA annotation in all aspects |
title_full | piRBase: integrating piRNA annotation in all aspects |
title_fullStr | piRBase: integrating piRNA annotation in all aspects |
title_full_unstemmed | piRBase: integrating piRNA annotation in all aspects |
title_short | piRBase: integrating piRNA annotation in all aspects |
title_sort | pirbase: integrating pirna annotation in all aspects |
topic | Database Issue |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8728152/ https://www.ncbi.nlm.nih.gov/pubmed/34871445 http://dx.doi.org/10.1093/nar/gkab1012 |
work_keys_str_mv | AT wangjiajia pirbaseintegratingpirnaannotationinallaspects AT shiyirong pirbaseintegratingpirnaannotationinallaspects AT zhouhonghong pirbaseintegratingpirnaannotationinallaspects AT zhangpeng pirbaseintegratingpirnaannotationinallaspects AT songtingrui pirbaseintegratingpirnaannotationinallaspects AT yingzhiye pirbaseintegratingpirnaannotationinallaspects AT yuhaopeng pirbaseintegratingpirnaannotationinallaspects AT liyanyan pirbaseintegratingpirnaannotationinallaspects AT zhaoyi pirbaseintegratingpirnaannotationinallaspects AT zengxiaoxi pirbaseintegratingpirnaannotationinallaspects AT heshunmin pirbaseintegratingpirnaannotationinallaspects AT chenrunsheng pirbaseintegratingpirnaannotationinallaspects |