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DisProt in 2022: improved quality and accessibility of protein intrinsic disorder annotation

The Database of Intrinsically Disordered Proteins (DisProt, URL: https://disprot.org) is the major repository of manually curated annotations of intrinsically disordered proteins and regions from the literature. We report here recent updates of DisProt version 9, including a restyled web interface,...

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Autores principales: Quaglia, Federica, Mészáros, Bálint, Salladini, Edoardo, Hatos, András, Pancsa, Rita, Chemes, Lucía B, Pajkos, Mátyás, Lazar, Tamas, Peña-Díaz, Samuel, Santos, Jaime, Ács, Veronika, Farahi, Nazanin, Fichó, Erzsébet, Aspromonte, Maria Cristina, Bassot, Claudio, Chasapi, Anastasia, Davey, Norman E, Davidović, Radoslav, Dobson, Laszlo, Elofsson, Arne, Erdős, Gábor, Gaudet, Pascale, Giglio, Michelle, Glavina, Juliana, Iserte, Javier, Iglesias, Valentín, Kálmán, Zsófia, Lambrughi, Matteo, Leonardi, Emanuela, Longhi, Sonia, Macedo-Ribeiro, Sandra, Maiani, Emiliano, Marchetti, Julia, Marino-Buslje, Cristina, Mészáros, Attila, Monzon, Alexander Miguel, Minervini, Giovanni, Nadendla, Suvarna, Nilsson, Juliet F, Novotný, Marian, Ouzounis, Christos A, Palopoli, Nicolás, Papaleo, Elena, Pereira, Pedro José Barbosa, Pozzati, Gabriele, Promponas, Vasilis J, Pujols, Jordi, Rocha, Alma Carolina Sanchez, Salas, Martin, Sawicki, Luciana Rodriguez, Schad, Eva, Shenoy, Aditi, Szaniszló, Tamás, Tsirigos, Konstantinos D, Veljkovic, Nevena, Parisi, Gustavo, Ventura, Salvador, Dosztányi, Zsuzsanna, Tompa, Peter, Tosatto, Silvio C E, Piovesan, Damiano
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8728214/
https://www.ncbi.nlm.nih.gov/pubmed/34850135
http://dx.doi.org/10.1093/nar/gkab1082
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author Quaglia, Federica
Mészáros, Bálint
Salladini, Edoardo
Hatos, András
Pancsa, Rita
Chemes, Lucía B
Pajkos, Mátyás
Lazar, Tamas
Peña-Díaz, Samuel
Santos, Jaime
Ács, Veronika
Farahi, Nazanin
Fichó, Erzsébet
Aspromonte, Maria Cristina
Bassot, Claudio
Chasapi, Anastasia
Davey, Norman E
Davidović, Radoslav
Dobson, Laszlo
Elofsson, Arne
Erdős, Gábor
Gaudet, Pascale
Giglio, Michelle
Glavina, Juliana
Iserte, Javier
Iglesias, Valentín
Kálmán, Zsófia
Lambrughi, Matteo
Leonardi, Emanuela
Longhi, Sonia
Macedo-Ribeiro, Sandra
Maiani, Emiliano
Marchetti, Julia
Marino-Buslje, Cristina
Mészáros, Attila
Monzon, Alexander Miguel
Minervini, Giovanni
Nadendla, Suvarna
Nilsson, Juliet F
Novotný, Marian
Ouzounis, Christos A
Palopoli, Nicolás
Papaleo, Elena
Pereira, Pedro José Barbosa
Pozzati, Gabriele
Promponas, Vasilis J
Pujols, Jordi
Rocha, Alma Carolina Sanchez
Salas, Martin
Sawicki, Luciana Rodriguez
Schad, Eva
Shenoy, Aditi
Szaniszló, Tamás
Tsirigos, Konstantinos D
Veljkovic, Nevena
Parisi, Gustavo
Ventura, Salvador
Dosztányi, Zsuzsanna
Tompa, Peter
Tosatto, Silvio C E
Piovesan, Damiano
author_facet Quaglia, Federica
Mészáros, Bálint
Salladini, Edoardo
Hatos, András
Pancsa, Rita
Chemes, Lucía B
Pajkos, Mátyás
Lazar, Tamas
Peña-Díaz, Samuel
Santos, Jaime
Ács, Veronika
Farahi, Nazanin
Fichó, Erzsébet
Aspromonte, Maria Cristina
Bassot, Claudio
Chasapi, Anastasia
Davey, Norman E
Davidović, Radoslav
Dobson, Laszlo
Elofsson, Arne
Erdős, Gábor
Gaudet, Pascale
Giglio, Michelle
Glavina, Juliana
Iserte, Javier
Iglesias, Valentín
Kálmán, Zsófia
Lambrughi, Matteo
Leonardi, Emanuela
Longhi, Sonia
Macedo-Ribeiro, Sandra
Maiani, Emiliano
Marchetti, Julia
Marino-Buslje, Cristina
Mészáros, Attila
Monzon, Alexander Miguel
Minervini, Giovanni
Nadendla, Suvarna
Nilsson, Juliet F
Novotný, Marian
Ouzounis, Christos A
Palopoli, Nicolás
Papaleo, Elena
Pereira, Pedro José Barbosa
Pozzati, Gabriele
Promponas, Vasilis J
Pujols, Jordi
Rocha, Alma Carolina Sanchez
Salas, Martin
Sawicki, Luciana Rodriguez
Schad, Eva
Shenoy, Aditi
Szaniszló, Tamás
Tsirigos, Konstantinos D
Veljkovic, Nevena
Parisi, Gustavo
Ventura, Salvador
Dosztányi, Zsuzsanna
Tompa, Peter
Tosatto, Silvio C E
Piovesan, Damiano
author_sort Quaglia, Federica
collection PubMed
description The Database of Intrinsically Disordered Proteins (DisProt, URL: https://disprot.org) is the major repository of manually curated annotations of intrinsically disordered proteins and regions from the literature. We report here recent updates of DisProt version 9, including a restyled web interface, refactored Intrinsically Disordered Proteins Ontology (IDPO), improvements in the curation process and significant content growth of around 30%. Higher quality and consistency of annotations is provided by a newly implemented reviewing process and training of curators. The increased curation capacity is fostered by the integration of DisProt with APICURON, a dedicated resource for the proper attribution and recognition of biocuration efforts. Better interoperability is provided through the adoption of the Minimum Information About Disorder (MIADE) standard, an active collaboration with the Gene Ontology (GO) and Evidence and Conclusion Ontology (ECO) consortia and the support of the ELIXIR infrastructure.
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spelling pubmed-87282142022-01-05 DisProt in 2022: improved quality and accessibility of protein intrinsic disorder annotation Quaglia, Federica Mészáros, Bálint Salladini, Edoardo Hatos, András Pancsa, Rita Chemes, Lucía B Pajkos, Mátyás Lazar, Tamas Peña-Díaz, Samuel Santos, Jaime Ács, Veronika Farahi, Nazanin Fichó, Erzsébet Aspromonte, Maria Cristina Bassot, Claudio Chasapi, Anastasia Davey, Norman E Davidović, Radoslav Dobson, Laszlo Elofsson, Arne Erdős, Gábor Gaudet, Pascale Giglio, Michelle Glavina, Juliana Iserte, Javier Iglesias, Valentín Kálmán, Zsófia Lambrughi, Matteo Leonardi, Emanuela Longhi, Sonia Macedo-Ribeiro, Sandra Maiani, Emiliano Marchetti, Julia Marino-Buslje, Cristina Mészáros, Attila Monzon, Alexander Miguel Minervini, Giovanni Nadendla, Suvarna Nilsson, Juliet F Novotný, Marian Ouzounis, Christos A Palopoli, Nicolás Papaleo, Elena Pereira, Pedro José Barbosa Pozzati, Gabriele Promponas, Vasilis J Pujols, Jordi Rocha, Alma Carolina Sanchez Salas, Martin Sawicki, Luciana Rodriguez Schad, Eva Shenoy, Aditi Szaniszló, Tamás Tsirigos, Konstantinos D Veljkovic, Nevena Parisi, Gustavo Ventura, Salvador Dosztányi, Zsuzsanna Tompa, Peter Tosatto, Silvio C E Piovesan, Damiano Nucleic Acids Res Database Issue The Database of Intrinsically Disordered Proteins (DisProt, URL: https://disprot.org) is the major repository of manually curated annotations of intrinsically disordered proteins and regions from the literature. We report here recent updates of DisProt version 9, including a restyled web interface, refactored Intrinsically Disordered Proteins Ontology (IDPO), improvements in the curation process and significant content growth of around 30%. Higher quality and consistency of annotations is provided by a newly implemented reviewing process and training of curators. The increased curation capacity is fostered by the integration of DisProt with APICURON, a dedicated resource for the proper attribution and recognition of biocuration efforts. Better interoperability is provided through the adoption of the Minimum Information About Disorder (MIADE) standard, an active collaboration with the Gene Ontology (GO) and Evidence and Conclusion Ontology (ECO) consortia and the support of the ELIXIR infrastructure. Oxford University Press 2021-11-25 /pmc/articles/PMC8728214/ /pubmed/34850135 http://dx.doi.org/10.1093/nar/gkab1082 Text en © The Author(s) 2021. Published by Oxford University Press on behalf of Nucleic Acids Research. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Database Issue
Quaglia, Federica
Mészáros, Bálint
Salladini, Edoardo
Hatos, András
Pancsa, Rita
Chemes, Lucía B
Pajkos, Mátyás
Lazar, Tamas
Peña-Díaz, Samuel
Santos, Jaime
Ács, Veronika
Farahi, Nazanin
Fichó, Erzsébet
Aspromonte, Maria Cristina
Bassot, Claudio
Chasapi, Anastasia
Davey, Norman E
Davidović, Radoslav
Dobson, Laszlo
Elofsson, Arne
Erdős, Gábor
Gaudet, Pascale
Giglio, Michelle
Glavina, Juliana
Iserte, Javier
Iglesias, Valentín
Kálmán, Zsófia
Lambrughi, Matteo
Leonardi, Emanuela
Longhi, Sonia
Macedo-Ribeiro, Sandra
Maiani, Emiliano
Marchetti, Julia
Marino-Buslje, Cristina
Mészáros, Attila
Monzon, Alexander Miguel
Minervini, Giovanni
Nadendla, Suvarna
Nilsson, Juliet F
Novotný, Marian
Ouzounis, Christos A
Palopoli, Nicolás
Papaleo, Elena
Pereira, Pedro José Barbosa
Pozzati, Gabriele
Promponas, Vasilis J
Pujols, Jordi
Rocha, Alma Carolina Sanchez
Salas, Martin
Sawicki, Luciana Rodriguez
Schad, Eva
Shenoy, Aditi
Szaniszló, Tamás
Tsirigos, Konstantinos D
Veljkovic, Nevena
Parisi, Gustavo
Ventura, Salvador
Dosztányi, Zsuzsanna
Tompa, Peter
Tosatto, Silvio C E
Piovesan, Damiano
DisProt in 2022: improved quality and accessibility of protein intrinsic disorder annotation
title DisProt in 2022: improved quality and accessibility of protein intrinsic disorder annotation
title_full DisProt in 2022: improved quality and accessibility of protein intrinsic disorder annotation
title_fullStr DisProt in 2022: improved quality and accessibility of protein intrinsic disorder annotation
title_full_unstemmed DisProt in 2022: improved quality and accessibility of protein intrinsic disorder annotation
title_short DisProt in 2022: improved quality and accessibility of protein intrinsic disorder annotation
title_sort disprot in 2022: improved quality and accessibility of protein intrinsic disorder annotation
topic Database Issue
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8728214/
https://www.ncbi.nlm.nih.gov/pubmed/34850135
http://dx.doi.org/10.1093/nar/gkab1082
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