Cargando…
DisProt in 2022: improved quality and accessibility of protein intrinsic disorder annotation
The Database of Intrinsically Disordered Proteins (DisProt, URL: https://disprot.org) is the major repository of manually curated annotations of intrinsically disordered proteins and regions from the literature. We report here recent updates of DisProt version 9, including a restyled web interface,...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2021
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8728214/ https://www.ncbi.nlm.nih.gov/pubmed/34850135 http://dx.doi.org/10.1093/nar/gkab1082 |
_version_ | 1784626687535742976 |
---|---|
author | Quaglia, Federica Mészáros, Bálint Salladini, Edoardo Hatos, András Pancsa, Rita Chemes, Lucía B Pajkos, Mátyás Lazar, Tamas Peña-Díaz, Samuel Santos, Jaime Ács, Veronika Farahi, Nazanin Fichó, Erzsébet Aspromonte, Maria Cristina Bassot, Claudio Chasapi, Anastasia Davey, Norman E Davidović, Radoslav Dobson, Laszlo Elofsson, Arne Erdős, Gábor Gaudet, Pascale Giglio, Michelle Glavina, Juliana Iserte, Javier Iglesias, Valentín Kálmán, Zsófia Lambrughi, Matteo Leonardi, Emanuela Longhi, Sonia Macedo-Ribeiro, Sandra Maiani, Emiliano Marchetti, Julia Marino-Buslje, Cristina Mészáros, Attila Monzon, Alexander Miguel Minervini, Giovanni Nadendla, Suvarna Nilsson, Juliet F Novotný, Marian Ouzounis, Christos A Palopoli, Nicolás Papaleo, Elena Pereira, Pedro José Barbosa Pozzati, Gabriele Promponas, Vasilis J Pujols, Jordi Rocha, Alma Carolina Sanchez Salas, Martin Sawicki, Luciana Rodriguez Schad, Eva Shenoy, Aditi Szaniszló, Tamás Tsirigos, Konstantinos D Veljkovic, Nevena Parisi, Gustavo Ventura, Salvador Dosztányi, Zsuzsanna Tompa, Peter Tosatto, Silvio C E Piovesan, Damiano |
author_facet | Quaglia, Federica Mészáros, Bálint Salladini, Edoardo Hatos, András Pancsa, Rita Chemes, Lucía B Pajkos, Mátyás Lazar, Tamas Peña-Díaz, Samuel Santos, Jaime Ács, Veronika Farahi, Nazanin Fichó, Erzsébet Aspromonte, Maria Cristina Bassot, Claudio Chasapi, Anastasia Davey, Norman E Davidović, Radoslav Dobson, Laszlo Elofsson, Arne Erdős, Gábor Gaudet, Pascale Giglio, Michelle Glavina, Juliana Iserte, Javier Iglesias, Valentín Kálmán, Zsófia Lambrughi, Matteo Leonardi, Emanuela Longhi, Sonia Macedo-Ribeiro, Sandra Maiani, Emiliano Marchetti, Julia Marino-Buslje, Cristina Mészáros, Attila Monzon, Alexander Miguel Minervini, Giovanni Nadendla, Suvarna Nilsson, Juliet F Novotný, Marian Ouzounis, Christos A Palopoli, Nicolás Papaleo, Elena Pereira, Pedro José Barbosa Pozzati, Gabriele Promponas, Vasilis J Pujols, Jordi Rocha, Alma Carolina Sanchez Salas, Martin Sawicki, Luciana Rodriguez Schad, Eva Shenoy, Aditi Szaniszló, Tamás Tsirigos, Konstantinos D Veljkovic, Nevena Parisi, Gustavo Ventura, Salvador Dosztányi, Zsuzsanna Tompa, Peter Tosatto, Silvio C E Piovesan, Damiano |
author_sort | Quaglia, Federica |
collection | PubMed |
description | The Database of Intrinsically Disordered Proteins (DisProt, URL: https://disprot.org) is the major repository of manually curated annotations of intrinsically disordered proteins and regions from the literature. We report here recent updates of DisProt version 9, including a restyled web interface, refactored Intrinsically Disordered Proteins Ontology (IDPO), improvements in the curation process and significant content growth of around 30%. Higher quality and consistency of annotations is provided by a newly implemented reviewing process and training of curators. The increased curation capacity is fostered by the integration of DisProt with APICURON, a dedicated resource for the proper attribution and recognition of biocuration efforts. Better interoperability is provided through the adoption of the Minimum Information About Disorder (MIADE) standard, an active collaboration with the Gene Ontology (GO) and Evidence and Conclusion Ontology (ECO) consortia and the support of the ELIXIR infrastructure. |
format | Online Article Text |
id | pubmed-8728214 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-87282142022-01-05 DisProt in 2022: improved quality and accessibility of protein intrinsic disorder annotation Quaglia, Federica Mészáros, Bálint Salladini, Edoardo Hatos, András Pancsa, Rita Chemes, Lucía B Pajkos, Mátyás Lazar, Tamas Peña-Díaz, Samuel Santos, Jaime Ács, Veronika Farahi, Nazanin Fichó, Erzsébet Aspromonte, Maria Cristina Bassot, Claudio Chasapi, Anastasia Davey, Norman E Davidović, Radoslav Dobson, Laszlo Elofsson, Arne Erdős, Gábor Gaudet, Pascale Giglio, Michelle Glavina, Juliana Iserte, Javier Iglesias, Valentín Kálmán, Zsófia Lambrughi, Matteo Leonardi, Emanuela Longhi, Sonia Macedo-Ribeiro, Sandra Maiani, Emiliano Marchetti, Julia Marino-Buslje, Cristina Mészáros, Attila Monzon, Alexander Miguel Minervini, Giovanni Nadendla, Suvarna Nilsson, Juliet F Novotný, Marian Ouzounis, Christos A Palopoli, Nicolás Papaleo, Elena Pereira, Pedro José Barbosa Pozzati, Gabriele Promponas, Vasilis J Pujols, Jordi Rocha, Alma Carolina Sanchez Salas, Martin Sawicki, Luciana Rodriguez Schad, Eva Shenoy, Aditi Szaniszló, Tamás Tsirigos, Konstantinos D Veljkovic, Nevena Parisi, Gustavo Ventura, Salvador Dosztányi, Zsuzsanna Tompa, Peter Tosatto, Silvio C E Piovesan, Damiano Nucleic Acids Res Database Issue The Database of Intrinsically Disordered Proteins (DisProt, URL: https://disprot.org) is the major repository of manually curated annotations of intrinsically disordered proteins and regions from the literature. We report here recent updates of DisProt version 9, including a restyled web interface, refactored Intrinsically Disordered Proteins Ontology (IDPO), improvements in the curation process and significant content growth of around 30%. Higher quality and consistency of annotations is provided by a newly implemented reviewing process and training of curators. The increased curation capacity is fostered by the integration of DisProt with APICURON, a dedicated resource for the proper attribution and recognition of biocuration efforts. Better interoperability is provided through the adoption of the Minimum Information About Disorder (MIADE) standard, an active collaboration with the Gene Ontology (GO) and Evidence and Conclusion Ontology (ECO) consortia and the support of the ELIXIR infrastructure. Oxford University Press 2021-11-25 /pmc/articles/PMC8728214/ /pubmed/34850135 http://dx.doi.org/10.1093/nar/gkab1082 Text en © The Author(s) 2021. Published by Oxford University Press on behalf of Nucleic Acids Research. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Database Issue Quaglia, Federica Mészáros, Bálint Salladini, Edoardo Hatos, András Pancsa, Rita Chemes, Lucía B Pajkos, Mátyás Lazar, Tamas Peña-Díaz, Samuel Santos, Jaime Ács, Veronika Farahi, Nazanin Fichó, Erzsébet Aspromonte, Maria Cristina Bassot, Claudio Chasapi, Anastasia Davey, Norman E Davidović, Radoslav Dobson, Laszlo Elofsson, Arne Erdős, Gábor Gaudet, Pascale Giglio, Michelle Glavina, Juliana Iserte, Javier Iglesias, Valentín Kálmán, Zsófia Lambrughi, Matteo Leonardi, Emanuela Longhi, Sonia Macedo-Ribeiro, Sandra Maiani, Emiliano Marchetti, Julia Marino-Buslje, Cristina Mészáros, Attila Monzon, Alexander Miguel Minervini, Giovanni Nadendla, Suvarna Nilsson, Juliet F Novotný, Marian Ouzounis, Christos A Palopoli, Nicolás Papaleo, Elena Pereira, Pedro José Barbosa Pozzati, Gabriele Promponas, Vasilis J Pujols, Jordi Rocha, Alma Carolina Sanchez Salas, Martin Sawicki, Luciana Rodriguez Schad, Eva Shenoy, Aditi Szaniszló, Tamás Tsirigos, Konstantinos D Veljkovic, Nevena Parisi, Gustavo Ventura, Salvador Dosztányi, Zsuzsanna Tompa, Peter Tosatto, Silvio C E Piovesan, Damiano DisProt in 2022: improved quality and accessibility of protein intrinsic disorder annotation |
title | DisProt in 2022: improved quality and accessibility of protein intrinsic disorder annotation |
title_full | DisProt in 2022: improved quality and accessibility of protein intrinsic disorder annotation |
title_fullStr | DisProt in 2022: improved quality and accessibility of protein intrinsic disorder annotation |
title_full_unstemmed | DisProt in 2022: improved quality and accessibility of protein intrinsic disorder annotation |
title_short | DisProt in 2022: improved quality and accessibility of protein intrinsic disorder annotation |
title_sort | disprot in 2022: improved quality and accessibility of protein intrinsic disorder annotation |
topic | Database Issue |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8728214/ https://www.ncbi.nlm.nih.gov/pubmed/34850135 http://dx.doi.org/10.1093/nar/gkab1082 |
work_keys_str_mv | AT quagliafederica disprotin2022improvedqualityandaccessibilityofproteinintrinsicdisorderannotation AT meszarosbalint disprotin2022improvedqualityandaccessibilityofproteinintrinsicdisorderannotation AT salladiniedoardo disprotin2022improvedqualityandaccessibilityofproteinintrinsicdisorderannotation AT hatosandras disprotin2022improvedqualityandaccessibilityofproteinintrinsicdisorderannotation AT pancsarita disprotin2022improvedqualityandaccessibilityofproteinintrinsicdisorderannotation AT chemesluciab disprotin2022improvedqualityandaccessibilityofproteinintrinsicdisorderannotation AT pajkosmatyas disprotin2022improvedqualityandaccessibilityofproteinintrinsicdisorderannotation AT lazartamas disprotin2022improvedqualityandaccessibilityofproteinintrinsicdisorderannotation AT penadiazsamuel disprotin2022improvedqualityandaccessibilityofproteinintrinsicdisorderannotation AT santosjaime disprotin2022improvedqualityandaccessibilityofproteinintrinsicdisorderannotation AT acsveronika disprotin2022improvedqualityandaccessibilityofproteinintrinsicdisorderannotation AT farahinazanin disprotin2022improvedqualityandaccessibilityofproteinintrinsicdisorderannotation AT fichoerzsebet disprotin2022improvedqualityandaccessibilityofproteinintrinsicdisorderannotation AT aspromontemariacristina disprotin2022improvedqualityandaccessibilityofproteinintrinsicdisorderannotation AT bassotclaudio disprotin2022improvedqualityandaccessibilityofproteinintrinsicdisorderannotation AT chasapianastasia disprotin2022improvedqualityandaccessibilityofproteinintrinsicdisorderannotation AT daveynormane disprotin2022improvedqualityandaccessibilityofproteinintrinsicdisorderannotation AT davidovicradoslav disprotin2022improvedqualityandaccessibilityofproteinintrinsicdisorderannotation AT dobsonlaszlo disprotin2022improvedqualityandaccessibilityofproteinintrinsicdisorderannotation AT elofssonarne disprotin2022improvedqualityandaccessibilityofproteinintrinsicdisorderannotation AT erdosgabor disprotin2022improvedqualityandaccessibilityofproteinintrinsicdisorderannotation AT gaudetpascale disprotin2022improvedqualityandaccessibilityofproteinintrinsicdisorderannotation AT gigliomichelle disprotin2022improvedqualityandaccessibilityofproteinintrinsicdisorderannotation AT glavinajuliana disprotin2022improvedqualityandaccessibilityofproteinintrinsicdisorderannotation AT isertejavier disprotin2022improvedqualityandaccessibilityofproteinintrinsicdisorderannotation AT iglesiasvalentin disprotin2022improvedqualityandaccessibilityofproteinintrinsicdisorderannotation AT kalmanzsofia disprotin2022improvedqualityandaccessibilityofproteinintrinsicdisorderannotation AT lambrughimatteo disprotin2022improvedqualityandaccessibilityofproteinintrinsicdisorderannotation AT leonardiemanuela disprotin2022improvedqualityandaccessibilityofproteinintrinsicdisorderannotation AT longhisonia disprotin2022improvedqualityandaccessibilityofproteinintrinsicdisorderannotation AT macedoribeirosandra disprotin2022improvedqualityandaccessibilityofproteinintrinsicdisorderannotation AT maianiemiliano disprotin2022improvedqualityandaccessibilityofproteinintrinsicdisorderannotation AT marchettijulia disprotin2022improvedqualityandaccessibilityofproteinintrinsicdisorderannotation AT marinobusljecristina disprotin2022improvedqualityandaccessibilityofproteinintrinsicdisorderannotation AT meszarosattila disprotin2022improvedqualityandaccessibilityofproteinintrinsicdisorderannotation AT monzonalexandermiguel disprotin2022improvedqualityandaccessibilityofproteinintrinsicdisorderannotation AT minervinigiovanni disprotin2022improvedqualityandaccessibilityofproteinintrinsicdisorderannotation AT nadendlasuvarna disprotin2022improvedqualityandaccessibilityofproteinintrinsicdisorderannotation AT nilssonjulietf disprotin2022improvedqualityandaccessibilityofproteinintrinsicdisorderannotation AT novotnymarian disprotin2022improvedqualityandaccessibilityofproteinintrinsicdisorderannotation AT ouzounischristosa disprotin2022improvedqualityandaccessibilityofproteinintrinsicdisorderannotation AT palopolinicolas disprotin2022improvedqualityandaccessibilityofproteinintrinsicdisorderannotation AT papaleoelena disprotin2022improvedqualityandaccessibilityofproteinintrinsicdisorderannotation AT pereirapedrojosebarbosa disprotin2022improvedqualityandaccessibilityofproteinintrinsicdisorderannotation AT pozzatigabriele disprotin2022improvedqualityandaccessibilityofproteinintrinsicdisorderannotation AT promponasvasilisj disprotin2022improvedqualityandaccessibilityofproteinintrinsicdisorderannotation AT pujolsjordi disprotin2022improvedqualityandaccessibilityofproteinintrinsicdisorderannotation AT rochaalmacarolinasanchez disprotin2022improvedqualityandaccessibilityofproteinintrinsicdisorderannotation AT salasmartin disprotin2022improvedqualityandaccessibilityofproteinintrinsicdisorderannotation AT sawickilucianarodriguez disprotin2022improvedqualityandaccessibilityofproteinintrinsicdisorderannotation AT schadeva disprotin2022improvedqualityandaccessibilityofproteinintrinsicdisorderannotation AT shenoyaditi disprotin2022improvedqualityandaccessibilityofproteinintrinsicdisorderannotation AT szaniszlotamas disprotin2022improvedqualityandaccessibilityofproteinintrinsicdisorderannotation AT tsirigoskonstantinosd disprotin2022improvedqualityandaccessibilityofproteinintrinsicdisorderannotation AT veljkovicnevena disprotin2022improvedqualityandaccessibilityofproteinintrinsicdisorderannotation AT parisigustavo disprotin2022improvedqualityandaccessibilityofproteinintrinsicdisorderannotation AT venturasalvador disprotin2022improvedqualityandaccessibilityofproteinintrinsicdisorderannotation AT dosztanyizsuzsanna disprotin2022improvedqualityandaccessibilityofproteinintrinsicdisorderannotation AT tompapeter disprotin2022improvedqualityandaccessibilityofproteinintrinsicdisorderannotation AT tosattosilvioce disprotin2022improvedqualityandaccessibilityofproteinintrinsicdisorderannotation AT piovesandamiano disprotin2022improvedqualityandaccessibilityofproteinintrinsicdisorderannotation |