SPICA: Swiss portal for immune cell analysis

Single-cell transcriptomics allows the study of immune cell heterogeneity at an unprecedented level of resolution. The Swiss portal for immune cell analysis (SPICA) is a web resource dedicated to the exploration and analysis of single-cell RNA-seq data of immune cells. In contrast to other single-ce...

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Detalles Bibliográficos
Autores principales: Andreatta, Massimo, David, Fabrice P A, Iseli, Christian, Guex, Nicolas, Carmona, Santiago J
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2021
Materias:
Database Issue
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8728228/
https://www.ncbi.nlm.nih.gov/pubmed/34747477
http://dx.doi.org/10.1093/nar/gkab1055
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author Andreatta, Massimo
David, Fabrice P A
Iseli, Christian
Guex, Nicolas
Carmona, Santiago J
author_facet Andreatta, Massimo
David, Fabrice P A
Iseli, Christian
Guex, Nicolas
Carmona, Santiago J
author_sort Andreatta, Massimo
collection PubMed
description Single-cell transcriptomics allows the study of immune cell heterogeneity at an unprecedented level of resolution. The Swiss portal for immune cell analysis (SPICA) is a web resource dedicated to the exploration and analysis of single-cell RNA-seq data of immune cells. In contrast to other single-cell databases, SPICA hosts curated, cell type-specific reference atlases that describe immune cell states at high resolution, and published single-cell datasets analysed in the context of these atlases. Additionally, users can privately analyse their own data in the context of existing atlases and contribute to the SPICA database. SPICA is available at https://spica.unil.ch.
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spelling pubmed-87282282022-01-05 SPICA: Swiss portal for immune cell analysis Andreatta, Massimo David, Fabrice P A Iseli, Christian Guex, Nicolas Carmona, Santiago J Nucleic Acids Res Database Issue Single-cell transcriptomics allows the study of immune cell heterogeneity at an unprecedented level of resolution. The Swiss portal for immune cell analysis (SPICA) is a web resource dedicated to the exploration and analysis of single-cell RNA-seq data of immune cells. In contrast to other single-cell databases, SPICA hosts curated, cell type-specific reference atlases that describe immune cell states at high resolution, and published single-cell datasets analysed in the context of these atlases. Additionally, users can privately analyse their own data in the context of existing atlases and contribute to the SPICA database. SPICA is available at https://spica.unil.ch. Oxford University Press 2021-11-08 /pmc/articles/PMC8728228/ /pubmed/34747477 http://dx.doi.org/10.1093/nar/gkab1055 Text en © The Author(s) 2021. Published by Oxford University Press on behalf of Nucleic Acids Research. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Database Issue
Andreatta, Massimo
David, Fabrice P A
Iseli, Christian
Guex, Nicolas
Carmona, Santiago J
SPICA: Swiss portal for immune cell analysis
title SPICA: Swiss portal for immune cell analysis
title_full SPICA: Swiss portal for immune cell analysis
title_fullStr SPICA: Swiss portal for immune cell analysis
title_full_unstemmed SPICA: Swiss portal for immune cell analysis
title_short SPICA: Swiss portal for immune cell analysis
title_sort spica: swiss portal for immune cell analysis
topic Database Issue
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8728228/
https://www.ncbi.nlm.nih.gov/pubmed/34747477
http://dx.doi.org/10.1093/nar/gkab1055
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