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ESC: a comprehensive resource for SARS-CoV-2 immune escape variants

Ever since the breakout of COVID-19 disease, ceaseless genomic research to inspect the epidemiology and evolution of the pathogen has been undertaken globally. Large scale viral genome sequencing and analysis have uncovered the functional impact of numerous genetic variants in disease pathogenesis a...

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Autores principales: Rophina, Mercy, Pandhare, Kavita, Shamnath, Afra, Imran, Mohamed, Jolly, Bani, Scaria, Vinod
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8728294/
https://www.ncbi.nlm.nih.gov/pubmed/34643704
http://dx.doi.org/10.1093/nar/gkab895
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author Rophina, Mercy
Pandhare, Kavita
Shamnath, Afra
Imran, Mohamed
Jolly, Bani
Scaria, Vinod
author_facet Rophina, Mercy
Pandhare, Kavita
Shamnath, Afra
Imran, Mohamed
Jolly, Bani
Scaria, Vinod
author_sort Rophina, Mercy
collection PubMed
description Ever since the breakout of COVID-19 disease, ceaseless genomic research to inspect the epidemiology and evolution of the pathogen has been undertaken globally. Large scale viral genome sequencing and analysis have uncovered the functional impact of numerous genetic variants in disease pathogenesis and transmission. Emerging evidence of mutations in spike protein domains escaping antibody neutralization is reported. We have built a database with precise collation of manually curated variants in SARS-CoV-2 from literature with potential escape mechanisms from a range of neutralizing antibodies. This comprehensive repository encompasses a total of 5258 variants accounting for 2068 unique variants tested against 230 antibodies, patient convalescent plasma and vaccine breakthrough events. This resource enables the user to gain access to an extensive annotation of SARS-CoV-2 escape variants which would contribute to exploring and understanding the underlying mechanisms of immune response against the pathogen. The resource is available at http://clingen.igib.res.in/esc/.
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spelling pubmed-87282942022-01-05 ESC: a comprehensive resource for SARS-CoV-2 immune escape variants Rophina, Mercy Pandhare, Kavita Shamnath, Afra Imran, Mohamed Jolly, Bani Scaria, Vinod Nucleic Acids Res Database Issue Ever since the breakout of COVID-19 disease, ceaseless genomic research to inspect the epidemiology and evolution of the pathogen has been undertaken globally. Large scale viral genome sequencing and analysis have uncovered the functional impact of numerous genetic variants in disease pathogenesis and transmission. Emerging evidence of mutations in spike protein domains escaping antibody neutralization is reported. We have built a database with precise collation of manually curated variants in SARS-CoV-2 from literature with potential escape mechanisms from a range of neutralizing antibodies. This comprehensive repository encompasses a total of 5258 variants accounting for 2068 unique variants tested against 230 antibodies, patient convalescent plasma and vaccine breakthrough events. This resource enables the user to gain access to an extensive annotation of SARS-CoV-2 escape variants which would contribute to exploring and understanding the underlying mechanisms of immune response against the pathogen. The resource is available at http://clingen.igib.res.in/esc/. Oxford University Press 2021-10-13 /pmc/articles/PMC8728294/ /pubmed/34643704 http://dx.doi.org/10.1093/nar/gkab895 Text en © The Author(s) 2021. Published by Oxford University Press on behalf of Nucleic Acids Research. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Database Issue
Rophina, Mercy
Pandhare, Kavita
Shamnath, Afra
Imran, Mohamed
Jolly, Bani
Scaria, Vinod
ESC: a comprehensive resource for SARS-CoV-2 immune escape variants
title ESC: a comprehensive resource for SARS-CoV-2 immune escape variants
title_full ESC: a comprehensive resource for SARS-CoV-2 immune escape variants
title_fullStr ESC: a comprehensive resource for SARS-CoV-2 immune escape variants
title_full_unstemmed ESC: a comprehensive resource for SARS-CoV-2 immune escape variants
title_short ESC: a comprehensive resource for SARS-CoV-2 immune escape variants
title_sort esc: a comprehensive resource for sars-cov-2 immune escape variants
topic Database Issue
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8728294/
https://www.ncbi.nlm.nih.gov/pubmed/34643704
http://dx.doi.org/10.1093/nar/gkab895
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