Cargando…

The 2022 Nucleic Acids Research database issue and the online molecular biology database collection

The 2022 Nucleic Acids Research Database Issue contains 185 papers, including 87 papers reporting on new databases and 85 updates from resources previously published in the Issue. Thirteen additional manuscripts provide updates on databases most recently published elsewhere. Seven new databases focu...

Descripción completa

Detalles Bibliográficos
Autores principales: Rigden, Daniel J, Fernández, Xosé M
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8728296/
https://www.ncbi.nlm.nih.gov/pubmed/34986604
http://dx.doi.org/10.1093/nar/gkab1195
_version_ 1784626707584516096
author Rigden, Daniel J
Fernández, Xosé M
author_facet Rigden, Daniel J
Fernández, Xosé M
author_sort Rigden, Daniel J
collection PubMed
description The 2022 Nucleic Acids Research Database Issue contains 185 papers, including 87 papers reporting on new databases and 85 updates from resources previously published in the Issue. Thirteen additional manuscripts provide updates on databases most recently published elsewhere. Seven new databases focus specifically on COVID-19 and SARS-CoV-2, including SCoV2-MD, the first of the Issue's Breakthrough Articles. Major nucleic acid databases reporting updates include MODOMICS, JASPAR and miRTarBase. The AlphaFold Protein Structure Database, described in the second Breakthrough Article, is the stand-out in the protein section, where the Human Proteoform Atlas and GproteinDb are other notable new arrivals. Updates from DisProt, FuzDB and ELM comprehensively cover disordered proteins. Under the metabolism and signalling section Reactome, ConsensusPathDB, HMDB and CAZy are major returning resources. In microbial and viral genomes taxonomy and systematics are well covered by LPSN, TYGS and GTDB. Genomics resources include Ensembl, Ensembl Genomes and UCSC Genome Browser. Major returning pharmacology resource names include the IUPHAR/BPS guide and the Therapeutic Target Database. New plant databases include PlantGSAD for gene lists and qPTMplants for post-translational modifications. The entire Database Issue is freely available online on the Nucleic Acids Research website (https://academic.oup.com/nar). Our latest update to the NAR online Molecular Biology Database Collection brings the total number of entries to 1645. Following last year's major cleanup, we have updated 317 entries, listing 89 new resources and trimming 80 discontinued URLs. The current release is available at http://www.oxfordjournals.org/nar/database/c/.
format Online
Article
Text
id pubmed-8728296
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Oxford University Press
record_format MEDLINE/PubMed
spelling pubmed-87282962022-01-05 The 2022 Nucleic Acids Research database issue and the online molecular biology database collection Rigden, Daniel J Fernández, Xosé M Nucleic Acids Res Editorial The 2022 Nucleic Acids Research Database Issue contains 185 papers, including 87 papers reporting on new databases and 85 updates from resources previously published in the Issue. Thirteen additional manuscripts provide updates on databases most recently published elsewhere. Seven new databases focus specifically on COVID-19 and SARS-CoV-2, including SCoV2-MD, the first of the Issue's Breakthrough Articles. Major nucleic acid databases reporting updates include MODOMICS, JASPAR and miRTarBase. The AlphaFold Protein Structure Database, described in the second Breakthrough Article, is the stand-out in the protein section, where the Human Proteoform Atlas and GproteinDb are other notable new arrivals. Updates from DisProt, FuzDB and ELM comprehensively cover disordered proteins. Under the metabolism and signalling section Reactome, ConsensusPathDB, HMDB and CAZy are major returning resources. In microbial and viral genomes taxonomy and systematics are well covered by LPSN, TYGS and GTDB. Genomics resources include Ensembl, Ensembl Genomes and UCSC Genome Browser. Major returning pharmacology resource names include the IUPHAR/BPS guide and the Therapeutic Target Database. New plant databases include PlantGSAD for gene lists and qPTMplants for post-translational modifications. The entire Database Issue is freely available online on the Nucleic Acids Research website (https://academic.oup.com/nar). Our latest update to the NAR online Molecular Biology Database Collection brings the total number of entries to 1645. Following last year's major cleanup, we have updated 317 entries, listing 89 new resources and trimming 80 discontinued URLs. The current release is available at http://www.oxfordjournals.org/nar/database/c/. Oxford University Press 2021-12-27 /pmc/articles/PMC8728296/ /pubmed/34986604 http://dx.doi.org/10.1093/nar/gkab1195 Text en © The Author(s) 2022. Published by Oxford University Press on behalf of Nucleic Acids Research. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Editorial
Rigden, Daniel J
Fernández, Xosé M
The 2022 Nucleic Acids Research database issue and the online molecular biology database collection
title The 2022 Nucleic Acids Research database issue and the online molecular biology database collection
title_full The 2022 Nucleic Acids Research database issue and the online molecular biology database collection
title_fullStr The 2022 Nucleic Acids Research database issue and the online molecular biology database collection
title_full_unstemmed The 2022 Nucleic Acids Research database issue and the online molecular biology database collection
title_short The 2022 Nucleic Acids Research database issue and the online molecular biology database collection
title_sort 2022 nucleic acids research database issue and the online molecular biology database collection
topic Editorial
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8728296/
https://www.ncbi.nlm.nih.gov/pubmed/34986604
http://dx.doi.org/10.1093/nar/gkab1195
work_keys_str_mv AT rigdendanielj the2022nucleicacidsresearchdatabaseissueandtheonlinemolecularbiologydatabasecollection
AT fernandezxosem the2022nucleicacidsresearchdatabaseissueandtheonlinemolecularbiologydatabasecollection
AT rigdendanielj 2022nucleicacidsresearchdatabaseissueandtheonlinemolecularbiologydatabasecollection
AT fernandezxosem 2022nucleicacidsresearchdatabaseissueandtheonlinemolecularbiologydatabasecollection