Cargando…

Contrasting Effects of Local Environmental and Biogeographic Factors on the Composition and Structure of Bacterial Communities in Arid Monospecific Mangrove Soils

Mangrove forests are important biotic sinks of atmospheric CO(2) and play an integral role in nutrient-cycling and decontamination of coastal waters, thereby mitigating climatic and anthropogenic stressors. These services are primarily regulated by the activity of the soil microbiome. To understand...

Descripción completa

Detalles Bibliográficos
Autores principales: Thomson, T., Fusi, M., Bennett-Smith, M. F., Prinz, N., Aylagas, E., Carvalho, S., Lovelock, C. E., Jones, B. H., Ellis, J. I.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Society for Microbiology 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8729789/
https://www.ncbi.nlm.nih.gov/pubmed/34985338
http://dx.doi.org/10.1128/spectrum.00903-21
_version_ 1784627007312625664
author Thomson, T.
Fusi, M.
Bennett-Smith, M. F.
Prinz, N.
Aylagas, E.
Carvalho, S.
Lovelock, C. E.
Jones, B. H.
Ellis, J. I.
author_facet Thomson, T.
Fusi, M.
Bennett-Smith, M. F.
Prinz, N.
Aylagas, E.
Carvalho, S.
Lovelock, C. E.
Jones, B. H.
Ellis, J. I.
author_sort Thomson, T.
collection PubMed
description Mangrove forests are important biotic sinks of atmospheric CO(2) and play an integral role in nutrient-cycling and decontamination of coastal waters, thereby mitigating climatic and anthropogenic stressors. These services are primarily regulated by the activity of the soil microbiome. To understand how environmental changes may affect this vital part of the ecosystem, it is key to understand the patterns that drive microbial community assembly in mangrove forest soils. High-throughput amplicon sequencing (16S rRNA) was applied on samples from arid Avicennia marina forests across different spatial scales from local to regional. Alongside conventional analyses of community ecology, microbial co-occurrence networks were assessed to investigate differences in composition and structure of the bacterial community. The bacterial community composition varied more strongly along an intertidal gradient within each mangrove forest, than between forests in different geographic regions (Australia/Saudi Arabia). In contrast, co-occurrence networks differed primarily between geographic regions, illustrating that the structure of the bacterial community is not necessarily linked to its composition. The local diversity in mangrove forest soils may have important implications for the quantification of biogeochemical processes and is important to consider when planning restoration activities. IMPORTANCE Mangrove ecosystems are increasingly being recognized for their potential to sequester atmospheric carbon, thereby mitigating the effects of anthropogenically driven greenhouse gas emissions. The bacterial community in the soils plays an important role in the breakdown and recycling of carbon and other nutrients. To assess and predict changes in carbon storage, it is important to understand how the bacterial community is shaped by its environment. Here, we compared the bacterial communities of mangrove forests on different spatial scales, from local within-forest to biogeographic comparisons. The bacterial community composition differed more between distinct intertidal zones of the same forest than between forests in distant geographic regions. The calculated network structure of theoretically interacting bacteria, however, differed most between the geographic regions. Our findings highlight the importance of local environmental factors in shaping the microbial soil community in mangroves and highlight a disconnect between community composition and structure in microbial soil assemblages.
format Online
Article
Text
id pubmed-8729789
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher American Society for Microbiology
record_format MEDLINE/PubMed
spelling pubmed-87297892022-01-06 Contrasting Effects of Local Environmental and Biogeographic Factors on the Composition and Structure of Bacterial Communities in Arid Monospecific Mangrove Soils Thomson, T. Fusi, M. Bennett-Smith, M. F. Prinz, N. Aylagas, E. Carvalho, S. Lovelock, C. E. Jones, B. H. Ellis, J. I. Microbiol Spectr Research Article Mangrove forests are important biotic sinks of atmospheric CO(2) and play an integral role in nutrient-cycling and decontamination of coastal waters, thereby mitigating climatic and anthropogenic stressors. These services are primarily regulated by the activity of the soil microbiome. To understand how environmental changes may affect this vital part of the ecosystem, it is key to understand the patterns that drive microbial community assembly in mangrove forest soils. High-throughput amplicon sequencing (16S rRNA) was applied on samples from arid Avicennia marina forests across different spatial scales from local to regional. Alongside conventional analyses of community ecology, microbial co-occurrence networks were assessed to investigate differences in composition and structure of the bacterial community. The bacterial community composition varied more strongly along an intertidal gradient within each mangrove forest, than between forests in different geographic regions (Australia/Saudi Arabia). In contrast, co-occurrence networks differed primarily between geographic regions, illustrating that the structure of the bacterial community is not necessarily linked to its composition. The local diversity in mangrove forest soils may have important implications for the quantification of biogeochemical processes and is important to consider when planning restoration activities. IMPORTANCE Mangrove ecosystems are increasingly being recognized for their potential to sequester atmospheric carbon, thereby mitigating the effects of anthropogenically driven greenhouse gas emissions. The bacterial community in the soils plays an important role in the breakdown and recycling of carbon and other nutrients. To assess and predict changes in carbon storage, it is important to understand how the bacterial community is shaped by its environment. Here, we compared the bacterial communities of mangrove forests on different spatial scales, from local within-forest to biogeographic comparisons. The bacterial community composition differed more between distinct intertidal zones of the same forest than between forests in distant geographic regions. The calculated network structure of theoretically interacting bacteria, however, differed most between the geographic regions. Our findings highlight the importance of local environmental factors in shaping the microbial soil community in mangroves and highlight a disconnect between community composition and structure in microbial soil assemblages. American Society for Microbiology 2022-01-05 /pmc/articles/PMC8729789/ /pubmed/34985338 http://dx.doi.org/10.1128/spectrum.00903-21 Text en Copyright © 2022 Thomson et al. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Research Article
Thomson, T.
Fusi, M.
Bennett-Smith, M. F.
Prinz, N.
Aylagas, E.
Carvalho, S.
Lovelock, C. E.
Jones, B. H.
Ellis, J. I.
Contrasting Effects of Local Environmental and Biogeographic Factors on the Composition and Structure of Bacterial Communities in Arid Monospecific Mangrove Soils
title Contrasting Effects of Local Environmental and Biogeographic Factors on the Composition and Structure of Bacterial Communities in Arid Monospecific Mangrove Soils
title_full Contrasting Effects of Local Environmental and Biogeographic Factors on the Composition and Structure of Bacterial Communities in Arid Monospecific Mangrove Soils
title_fullStr Contrasting Effects of Local Environmental and Biogeographic Factors on the Composition and Structure of Bacterial Communities in Arid Monospecific Mangrove Soils
title_full_unstemmed Contrasting Effects of Local Environmental and Biogeographic Factors on the Composition and Structure of Bacterial Communities in Arid Monospecific Mangrove Soils
title_short Contrasting Effects of Local Environmental and Biogeographic Factors on the Composition and Structure of Bacterial Communities in Arid Monospecific Mangrove Soils
title_sort contrasting effects of local environmental and biogeographic factors on the composition and structure of bacterial communities in arid monospecific mangrove soils
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8729789/
https://www.ncbi.nlm.nih.gov/pubmed/34985338
http://dx.doi.org/10.1128/spectrum.00903-21
work_keys_str_mv AT thomsont contrastingeffectsoflocalenvironmentalandbiogeographicfactorsonthecompositionandstructureofbacterialcommunitiesinaridmonospecificmangrovesoils
AT fusim contrastingeffectsoflocalenvironmentalandbiogeographicfactorsonthecompositionandstructureofbacterialcommunitiesinaridmonospecificmangrovesoils
AT bennettsmithmf contrastingeffectsoflocalenvironmentalandbiogeographicfactorsonthecompositionandstructureofbacterialcommunitiesinaridmonospecificmangrovesoils
AT prinzn contrastingeffectsoflocalenvironmentalandbiogeographicfactorsonthecompositionandstructureofbacterialcommunitiesinaridmonospecificmangrovesoils
AT aylagase contrastingeffectsoflocalenvironmentalandbiogeographicfactorsonthecompositionandstructureofbacterialcommunitiesinaridmonospecificmangrovesoils
AT carvalhos contrastingeffectsoflocalenvironmentalandbiogeographicfactorsonthecompositionandstructureofbacterialcommunitiesinaridmonospecificmangrovesoils
AT lovelockce contrastingeffectsoflocalenvironmentalandbiogeographicfactorsonthecompositionandstructureofbacterialcommunitiesinaridmonospecificmangrovesoils
AT jonesbh contrastingeffectsoflocalenvironmentalandbiogeographicfactorsonthecompositionandstructureofbacterialcommunitiesinaridmonospecificmangrovesoils
AT ellisji contrastingeffectsoflocalenvironmentalandbiogeographicfactorsonthecompositionandstructureofbacterialcommunitiesinaridmonospecificmangrovesoils