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Trends in Development of Novel Machine Learning Methods for the Identification of Gliomas in Datasets That Include Non-Glioma Images: A Systematic Review

PURPOSE: Machine learning has been applied to the diagnostic imaging of gliomas to augment classification, prognostication, segmentation, and treatment planning. A systematic literature review was performed to identify how machine learning has been applied to identify gliomas in datasets which inclu...

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Autores principales: Subramanian, Harry, Dey, Rahul, Brim, Waverly Rose, Tillmanns, Niklas, Cassinelli Petersen, Gabriel, Brackett, Alexandria, Mahajan, Amit, Johnson, Michele, Malhotra, Ajay, Aboian, Mariam
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8733688/
https://www.ncbi.nlm.nih.gov/pubmed/35004312
http://dx.doi.org/10.3389/fonc.2021.788819
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author Subramanian, Harry
Dey, Rahul
Brim, Waverly Rose
Tillmanns, Niklas
Cassinelli Petersen, Gabriel
Brackett, Alexandria
Mahajan, Amit
Johnson, Michele
Malhotra, Ajay
Aboian, Mariam
author_facet Subramanian, Harry
Dey, Rahul
Brim, Waverly Rose
Tillmanns, Niklas
Cassinelli Petersen, Gabriel
Brackett, Alexandria
Mahajan, Amit
Johnson, Michele
Malhotra, Ajay
Aboian, Mariam
author_sort Subramanian, Harry
collection PubMed
description PURPOSE: Machine learning has been applied to the diagnostic imaging of gliomas to augment classification, prognostication, segmentation, and treatment planning. A systematic literature review was performed to identify how machine learning has been applied to identify gliomas in datasets which include non-glioma images thereby simulating normal clinical practice. MATERIALS AND METHODS: Four databases were searched by a medical librarian and confirmed by a second librarian for all articles published prior to February 1, 2021: Ovid Embase, Ovid MEDLINE, Cochrane trials (CENTRAL), and Web of Science-Core Collection. The search strategy included both keywords and controlled vocabulary combining the terms for: artificial intelligence, machine learning, deep learning, radiomics, magnetic resonance imaging, glioma, as well as related terms. The review was conducted in stepwise fashion with abstract screening, full text screening, and data extraction. Quality of reporting was assessed using TRIPOD criteria. RESULTS: A total of 11,727 candidate articles were identified, of which 12 articles were included in the final analysis. Studies investigated the differentiation of normal from abnormal images in datasets which include gliomas (7 articles) and the differentiation of glioma images from non-glioma or normal images (5 articles). Single institution datasets were most common (5 articles) followed by BRATS (3 articles). The median sample size was 280 patients. Algorithm testing strategies consisted of five-fold cross validation (5 articles), and the use of exclusive sets of images within the same dataset for training and for testing (7 articles). Neural networks were the most common type of algorithm (10 articles). The accuracy of algorithms ranged from 0.75 to 1.00 (median 0.96, 10 articles). Quality of reporting assessment utilizing TRIPOD criteria yielded a mean individual TRIPOD ratio of 0.50 (standard deviation 0.14, range 0.37 to 0.85). CONCLUSION: Systematic review investigating the identification of gliomas in datasets which include non-glioma images demonstrated multiple limitations hindering the application of these algorithms to clinical practice. These included limited datasets, a lack of generalizable algorithm training and testing strategies, and poor quality of reporting. The development of more robust and heterogeneous datasets is needed for algorithm development. Future studies would benefit from using external datasets for algorithm testing as well as placing increased attention on quality of reporting standards. SYSTEMATIC REVIEW REGISTRATION: www.crd.york.ac.uk/prospero/display_record.php?ID=CRD42020209938, International Prospective Register of Systematic Reviews (PROSPERO 2020 CRD42020209938).
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spelling pubmed-87336882022-01-07 Trends in Development of Novel Machine Learning Methods for the Identification of Gliomas in Datasets That Include Non-Glioma Images: A Systematic Review Subramanian, Harry Dey, Rahul Brim, Waverly Rose Tillmanns, Niklas Cassinelli Petersen, Gabriel Brackett, Alexandria Mahajan, Amit Johnson, Michele Malhotra, Ajay Aboian, Mariam Front Oncol Oncology PURPOSE: Machine learning has been applied to the diagnostic imaging of gliomas to augment classification, prognostication, segmentation, and treatment planning. A systematic literature review was performed to identify how machine learning has been applied to identify gliomas in datasets which include non-glioma images thereby simulating normal clinical practice. MATERIALS AND METHODS: Four databases were searched by a medical librarian and confirmed by a second librarian for all articles published prior to February 1, 2021: Ovid Embase, Ovid MEDLINE, Cochrane trials (CENTRAL), and Web of Science-Core Collection. The search strategy included both keywords and controlled vocabulary combining the terms for: artificial intelligence, machine learning, deep learning, radiomics, magnetic resonance imaging, glioma, as well as related terms. The review was conducted in stepwise fashion with abstract screening, full text screening, and data extraction. Quality of reporting was assessed using TRIPOD criteria. RESULTS: A total of 11,727 candidate articles were identified, of which 12 articles were included in the final analysis. Studies investigated the differentiation of normal from abnormal images in datasets which include gliomas (7 articles) and the differentiation of glioma images from non-glioma or normal images (5 articles). Single institution datasets were most common (5 articles) followed by BRATS (3 articles). The median sample size was 280 patients. Algorithm testing strategies consisted of five-fold cross validation (5 articles), and the use of exclusive sets of images within the same dataset for training and for testing (7 articles). Neural networks were the most common type of algorithm (10 articles). The accuracy of algorithms ranged from 0.75 to 1.00 (median 0.96, 10 articles). Quality of reporting assessment utilizing TRIPOD criteria yielded a mean individual TRIPOD ratio of 0.50 (standard deviation 0.14, range 0.37 to 0.85). CONCLUSION: Systematic review investigating the identification of gliomas in datasets which include non-glioma images demonstrated multiple limitations hindering the application of these algorithms to clinical practice. These included limited datasets, a lack of generalizable algorithm training and testing strategies, and poor quality of reporting. The development of more robust and heterogeneous datasets is needed for algorithm development. Future studies would benefit from using external datasets for algorithm testing as well as placing increased attention on quality of reporting standards. SYSTEMATIC REVIEW REGISTRATION: www.crd.york.ac.uk/prospero/display_record.php?ID=CRD42020209938, International Prospective Register of Systematic Reviews (PROSPERO 2020 CRD42020209938). Frontiers Media S.A. 2021-12-23 /pmc/articles/PMC8733688/ /pubmed/35004312 http://dx.doi.org/10.3389/fonc.2021.788819 Text en Copyright © 2021 Subramanian, Dey, Brim, Tillmanns, Cassinelli Petersen, Brackett, Mahajan, Johnson, Malhotra and Aboian https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Oncology
Subramanian, Harry
Dey, Rahul
Brim, Waverly Rose
Tillmanns, Niklas
Cassinelli Petersen, Gabriel
Brackett, Alexandria
Mahajan, Amit
Johnson, Michele
Malhotra, Ajay
Aboian, Mariam
Trends in Development of Novel Machine Learning Methods for the Identification of Gliomas in Datasets That Include Non-Glioma Images: A Systematic Review
title Trends in Development of Novel Machine Learning Methods for the Identification of Gliomas in Datasets That Include Non-Glioma Images: A Systematic Review
title_full Trends in Development of Novel Machine Learning Methods for the Identification of Gliomas in Datasets That Include Non-Glioma Images: A Systematic Review
title_fullStr Trends in Development of Novel Machine Learning Methods for the Identification of Gliomas in Datasets That Include Non-Glioma Images: A Systematic Review
title_full_unstemmed Trends in Development of Novel Machine Learning Methods for the Identification of Gliomas in Datasets That Include Non-Glioma Images: A Systematic Review
title_short Trends in Development of Novel Machine Learning Methods for the Identification of Gliomas in Datasets That Include Non-Glioma Images: A Systematic Review
title_sort trends in development of novel machine learning methods for the identification of gliomas in datasets that include non-glioma images: a systematic review
topic Oncology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8733688/
https://www.ncbi.nlm.nih.gov/pubmed/35004312
http://dx.doi.org/10.3389/fonc.2021.788819
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