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Insights into molecular recognition from the crystal structures of p-tert-butylcalix[6]arene complexed with different solvents
Calixarenes are host molecules that can form complexes with one or more guest molecules, and molecular recognition in calixarenes can be affected by many factors. With a view to establishing molecular recognition rules, the host p-tert-butylcalix[6]arene (TBC6) was crystallized with different guest...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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International Union of Crystallography
2021
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8733874/ https://www.ncbi.nlm.nih.gov/pubmed/35059210 http://dx.doi.org/10.1107/S2052252521010678 |
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author | Malinska, Maura |
author_facet | Malinska, Maura |
author_sort | Malinska, Maura |
collection | PubMed |
description | Calixarenes are host molecules that can form complexes with one or more guest molecules, and molecular recognition in calixarenes can be affected by many factors. With a view to establishing molecular recognition rules, the host p-tert-butylcalix[6]arene (TBC6) was crystallized with different guest molecules (cyclohexane, anisole, heptane, toluene, benzene, methyl acetate, ethyl acetate, dichloromethane, tetrahydrofuran and pyridine) and the obtained structures were characterized by X-ray diffraction. With most solvents, 1:1 and/or 1:3 host–guest complexes were formed, although other stoichiometries were also observed with small guest molecules, and crystallization from ethyl acetate produced the unsolvated form. The calculated fill percentage of the TBC6 cavity was ∼55% for apolar guests and significantly lower for polar solvents, indicating that polar molecules can bind to apolar cavities with significantly lower packing coefficients. The most stable crystals were formed by 1:1 host–guest inclusion complexes. The ratio between the apolar surface area and the volume was used to predict the formation of inclusion versus exclusion complexes, with inclusion complexes observed at ratios <40. These findings allow the binding of potential guest molecules to be predicted and a suitable crystal packing for the designed properties to be obtained. |
format | Online Article Text |
id | pubmed-8733874 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-87338742022-01-19 Insights into molecular recognition from the crystal structures of p-tert-butylcalix[6]arene complexed with different solvents Malinska, Maura IUCrJ Research Papers Calixarenes are host molecules that can form complexes with one or more guest molecules, and molecular recognition in calixarenes can be affected by many factors. With a view to establishing molecular recognition rules, the host p-tert-butylcalix[6]arene (TBC6) was crystallized with different guest molecules (cyclohexane, anisole, heptane, toluene, benzene, methyl acetate, ethyl acetate, dichloromethane, tetrahydrofuran and pyridine) and the obtained structures were characterized by X-ray diffraction. With most solvents, 1:1 and/or 1:3 host–guest complexes were formed, although other stoichiometries were also observed with small guest molecules, and crystallization from ethyl acetate produced the unsolvated form. The calculated fill percentage of the TBC6 cavity was ∼55% for apolar guests and significantly lower for polar solvents, indicating that polar molecules can bind to apolar cavities with significantly lower packing coefficients. The most stable crystals were formed by 1:1 host–guest inclusion complexes. The ratio between the apolar surface area and the volume was used to predict the formation of inclusion versus exclusion complexes, with inclusion complexes observed at ratios <40. These findings allow the binding of potential guest molecules to be predicted and a suitable crystal packing for the designed properties to be obtained. International Union of Crystallography 2021-11-16 /pmc/articles/PMC8733874/ /pubmed/35059210 http://dx.doi.org/10.1107/S2052252521010678 Text en © Maura Malinska 2022 https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited. |
spellingShingle | Research Papers Malinska, Maura Insights into molecular recognition from the crystal structures of p-tert-butylcalix[6]arene complexed with different solvents |
title | Insights into molecular recognition from the crystal structures of p-tert-butylcalix[6]arene complexed with different solvents |
title_full | Insights into molecular recognition from the crystal structures of p-tert-butylcalix[6]arene complexed with different solvents |
title_fullStr | Insights into molecular recognition from the crystal structures of p-tert-butylcalix[6]arene complexed with different solvents |
title_full_unstemmed | Insights into molecular recognition from the crystal structures of p-tert-butylcalix[6]arene complexed with different solvents |
title_short | Insights into molecular recognition from the crystal structures of p-tert-butylcalix[6]arene complexed with different solvents |
title_sort | insights into molecular recognition from the crystal structures of p-tert-butylcalix[6]arene complexed with different solvents |
topic | Research Papers |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8733874/ https://www.ncbi.nlm.nih.gov/pubmed/35059210 http://dx.doi.org/10.1107/S2052252521010678 |
work_keys_str_mv | AT malinskamaura insightsintomolecularrecognitionfromthecrystalstructuresofptertbutylcalix6arenecomplexedwithdifferentsolvents |