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Machine learning denoising of high-resolution X-ray nano­tomography data

High-resolution X-ray nano­tomography is a quantitative tool for investigating specimens from a wide range of research areas. However, the quality of the reconstructed tomogram is often obscured by noise and therefore not suitable for automatic segmentation. Filtering methods are often required for...

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Detalles Bibliográficos
Autores principales: Flenner, Silja, Bruns, Stefan, Longo, Elena, Parnell, Andrew J., Stockhausen, Kilian E., Müller, Martin, Greving, Imke
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8733986/
https://www.ncbi.nlm.nih.gov/pubmed/34985440
http://dx.doi.org/10.1107/S1600577521011139
Descripción
Sumario:High-resolution X-ray nano­tomography is a quantitative tool for investigating specimens from a wide range of research areas. However, the quality of the reconstructed tomogram is often obscured by noise and therefore not suitable for automatic segmentation. Filtering methods are often required for a detailed quantitative analysis. However, most filters induce blurring in the reconstructed tomograms. Here, machine learning (ML) techniques offer a powerful alternative to conventional filtering methods. In this article, we verify that a self-supervised denoising ML technique can be used in a very efficient way for eliminating noise from nano­tomography data. The technique presented is applied to high-resolution nano­tomography data and compared to conventional filters, such as a median filter and a nonlocal means filter, optimized for tomographic data sets. The ML approach proves to be a very powerful tool that outperforms conventional filters by eliminating noise without blurring relevant structural features, thus enabling efficient quantitative analysis in different scientific fields.