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Crystal structure, Hirshfeld surface analysis and DFT study of 2,2′′-({[(1E,1′E)-(diselanediyl)bis(2,1-phenylene)]bis(methaneylylidene)}bis(azaneylylidene))bis[3′,6′-bis(diethylamino)-4a’,9a’-dihydrospiro[isoindoline-1,9′-xanthen]-3-one]
The title compound, C(70)H(70)N(8)O(4)Se(2), is a spiro bicyclic diselenide, made up of two [SeC(6)H(4)CH=N—N(CO)C(6)H(4)(C)C(6)H(3)NEt(2)(O)C(6)H(3)NEt(2)] units related by a twofold crystallographic symmetry element bisecting the diselenide bond. The compound crystallizes in a non-centrosymmetric...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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International Union of Crystallography
2022
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8739208/ https://www.ncbi.nlm.nih.gov/pubmed/35079413 http://dx.doi.org/10.1107/S2056989021013189 |
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author | Malla, Manzoor Ahmad Bansal, Ravi Butcher, Ray J. Gupta, Sushil K. |
author_facet | Malla, Manzoor Ahmad Bansal, Ravi Butcher, Ray J. Gupta, Sushil K. |
author_sort | Malla, Manzoor Ahmad |
collection | PubMed |
description | The title compound, C(70)H(70)N(8)O(4)Se(2), is a spiro bicyclic diselenide, made up of two [SeC(6)H(4)CH=N—N(CO)C(6)H(4)(C)C(6)H(3)NEt(2)(O)C(6)H(3)NEt(2)] units related by a twofold crystallographic symmetry element bisecting the diselenide bond. The compound crystallizes in a non-centrosymmetric polar space group (tetragonal, P [Image: see text] b2) and the structure was refined as an inversion twin. The two diethyl amine groups and their attached phenyl groups of the xanthene ring are disordered over two orientations, with occupancies of 0.664 (19)/0.336 (19) and 0.665 (11)/0.335 (11), respectively. The dihedral angles between the mean planes of the central isoindoline and the phenyl rings are 26.8 (2) and 2.5 (4)°, respectively. The mean plane of the central xanthene ring forms dihedral angles of 2.0 (5), 8.8 (5), 1.7 (5) and 7.9 (6)° with the peripheral phenyl rings. The isoindoline and xanthene rings subtend a dihedral angle of 89.8 (2)°. The molecular conformation is stabilized by an intramolecular C—H⋯O hydrogen bond generating an S(6) ring motif. In the crystal, molecules are linked by C—H⋯O hydrogen bonds together with C—H⋯π (ring) interactions, forming a three-dimensional network. A Hirshfeld surface analysis of the crystal structure indicates that the most important contributions to the crystal packing are from H⋯H (68.1%), C⋯H/H⋯C (21.2%) and O⋯H/H⋯O (8.7%) contacts. The optimized structure calculated using density functional theory (DFT) at the B3LYP/6 – 31 G(d) level is compared with the experimentally determined molecular structure in the solid state. The HOMO–LUMO behaviour was used to determine the energy gap and the molecular electrostatic potential (MEP) of the compound was investigated. |
format | Online Article Text |
id | pubmed-8739208 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-87392082022-01-24 Crystal structure, Hirshfeld surface analysis and DFT study of 2,2′′-({[(1E,1′E)-(diselanediyl)bis(2,1-phenylene)]bis(methaneylylidene)}bis(azaneylylidene))bis[3′,6′-bis(diethylamino)-4a’,9a’-dihydrospiro[isoindoline-1,9′-xanthen]-3-one] Malla, Manzoor Ahmad Bansal, Ravi Butcher, Ray J. Gupta, Sushil K. Acta Crystallogr E Crystallogr Commun Jerry P. Jasinski tribute The title compound, C(70)H(70)N(8)O(4)Se(2), is a spiro bicyclic diselenide, made up of two [SeC(6)H(4)CH=N—N(CO)C(6)H(4)(C)C(6)H(3)NEt(2)(O)C(6)H(3)NEt(2)] units related by a twofold crystallographic symmetry element bisecting the diselenide bond. The compound crystallizes in a non-centrosymmetric polar space group (tetragonal, P [Image: see text] b2) and the structure was refined as an inversion twin. The two diethyl amine groups and their attached phenyl groups of the xanthene ring are disordered over two orientations, with occupancies of 0.664 (19)/0.336 (19) and 0.665 (11)/0.335 (11), respectively. The dihedral angles between the mean planes of the central isoindoline and the phenyl rings are 26.8 (2) and 2.5 (4)°, respectively. The mean plane of the central xanthene ring forms dihedral angles of 2.0 (5), 8.8 (5), 1.7 (5) and 7.9 (6)° with the peripheral phenyl rings. The isoindoline and xanthene rings subtend a dihedral angle of 89.8 (2)°. The molecular conformation is stabilized by an intramolecular C—H⋯O hydrogen bond generating an S(6) ring motif. In the crystal, molecules are linked by C—H⋯O hydrogen bonds together with C—H⋯π (ring) interactions, forming a three-dimensional network. A Hirshfeld surface analysis of the crystal structure indicates that the most important contributions to the crystal packing are from H⋯H (68.1%), C⋯H/H⋯C (21.2%) and O⋯H/H⋯O (8.7%) contacts. The optimized structure calculated using density functional theory (DFT) at the B3LYP/6 – 31 G(d) level is compared with the experimentally determined molecular structure in the solid state. The HOMO–LUMO behaviour was used to determine the energy gap and the molecular electrostatic potential (MEP) of the compound was investigated. International Union of Crystallography 2022-01-01 /pmc/articles/PMC8739208/ /pubmed/35079413 http://dx.doi.org/10.1107/S2056989021013189 Text en © Malla et al. 2022 https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited. |
spellingShingle | Jerry P. Jasinski tribute Malla, Manzoor Ahmad Bansal, Ravi Butcher, Ray J. Gupta, Sushil K. Crystal structure, Hirshfeld surface analysis and DFT study of 2,2′′-({[(1E,1′E)-(diselanediyl)bis(2,1-phenylene)]bis(methaneylylidene)}bis(azaneylylidene))bis[3′,6′-bis(diethylamino)-4a’,9a’-dihydrospiro[isoindoline-1,9′-xanthen]-3-one] |
title | Crystal structure, Hirshfeld surface analysis and DFT study of 2,2′′-({[(1E,1′E)-(diselanediyl)bis(2,1-phenylene)]bis(methaneylylidene)}bis(azaneylylidene))bis[3′,6′-bis(diethylamino)-4a’,9a’-dihydrospiro[isoindoline-1,9′-xanthen]-3-one] |
title_full | Crystal structure, Hirshfeld surface analysis and DFT study of 2,2′′-({[(1E,1′E)-(diselanediyl)bis(2,1-phenylene)]bis(methaneylylidene)}bis(azaneylylidene))bis[3′,6′-bis(diethylamino)-4a’,9a’-dihydrospiro[isoindoline-1,9′-xanthen]-3-one] |
title_fullStr | Crystal structure, Hirshfeld surface analysis and DFT study of 2,2′′-({[(1E,1′E)-(diselanediyl)bis(2,1-phenylene)]bis(methaneylylidene)}bis(azaneylylidene))bis[3′,6′-bis(diethylamino)-4a’,9a’-dihydrospiro[isoindoline-1,9′-xanthen]-3-one] |
title_full_unstemmed | Crystal structure, Hirshfeld surface analysis and DFT study of 2,2′′-({[(1E,1′E)-(diselanediyl)bis(2,1-phenylene)]bis(methaneylylidene)}bis(azaneylylidene))bis[3′,6′-bis(diethylamino)-4a’,9a’-dihydrospiro[isoindoline-1,9′-xanthen]-3-one] |
title_short | Crystal structure, Hirshfeld surface analysis and DFT study of 2,2′′-({[(1E,1′E)-(diselanediyl)bis(2,1-phenylene)]bis(methaneylylidene)}bis(azaneylylidene))bis[3′,6′-bis(diethylamino)-4a’,9a’-dihydrospiro[isoindoline-1,9′-xanthen]-3-one] |
title_sort | crystal structure, hirshfeld surface analysis and dft study of 2,2′′-({[(1e,1′e)-(diselanediyl)bis(2,1-phenylene)]bis(methaneylylidene)}bis(azaneylylidene))bis[3′,6′-bis(diethylamino)-4a’,9a’-dihydrospiro[isoindoline-1,9′-xanthen]-3-one] |
topic | Jerry P. Jasinski tribute |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8739208/ https://www.ncbi.nlm.nih.gov/pubmed/35079413 http://dx.doi.org/10.1107/S2056989021013189 |
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