Characterization of the complete chloroplast genome of a Peruvian landrace of Capsicum chinense Jacq. (Solanaceae), arnaucho chili pepper

In this study, we sequenced the first complete chloroplast (cp) genome of a Peruvian chili pepper landrace, “arnacucho” (Capsicum chinense). This cp genome has a 156,931 bp in length with typical quadripartite structure, containing a large single copy (LSC) region (87,325 bp) and a 17,912 bp small s...

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Autores principales: Arbizu, Carlos I., Saldaña, Carla L., Ferro-Mauricio, Rubén D., Chávez-Galarza, Julio C., Herrera, Jordan, Contreras-Liza, Sergio, Guerrero-Abad, Juan C., Maicelo, Jorge L.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2022
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8741228/
https://www.ncbi.nlm.nih.gov/pubmed/35005231
http://dx.doi.org/10.1080/23802359.2021.2014366
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author Arbizu, Carlos I.
Saldaña, Carla L.
Ferro-Mauricio, Rubén D.
Chávez-Galarza, Julio C.
Herrera, Jordan
Contreras-Liza, Sergio
Guerrero-Abad, Juan C.
Maicelo, Jorge L.
author_facet Arbizu, Carlos I.
Saldaña, Carla L.
Ferro-Mauricio, Rubén D.
Chávez-Galarza, Julio C.
Herrera, Jordan
Contreras-Liza, Sergio
Guerrero-Abad, Juan C.
Maicelo, Jorge L.
author_sort Arbizu, Carlos I.
collection PubMed
description In this study, we sequenced the first complete chloroplast (cp) genome of a Peruvian chili pepper landrace, “arnacucho” (Capsicum chinense). This cp genome has a 156,931 bp in length with typical quadripartite structure, containing a large single copy (LSC) region (87,325 bp) and a 17,912 bp small single-copy (SSC) region, separated by two inverted repeat (IR) regions (25,847 bp); and the percentage of GC content was 37.71%. Arnaucho chili pepper chloroplast genome possesses 133 genes that consists of 86 protein-coding genes, 37 tRNA, eight rRNA, and two pseudogenes. Phylogenetic analysis revealed that this Peruvian chili pepper landrace is closely related to the undomesticated species C. galapagoense; all belong to the Capsiceae tribe.
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spelling pubmed-87412282022-01-08 Characterization of the complete chloroplast genome of a Peruvian landrace of Capsicum chinense Jacq. (Solanaceae), arnaucho chili pepper Arbizu, Carlos I. Saldaña, Carla L. Ferro-Mauricio, Rubén D. Chávez-Galarza, Julio C. Herrera, Jordan Contreras-Liza, Sergio Guerrero-Abad, Juan C. Maicelo, Jorge L. Mitochondrial DNA B Resour Mitogenome Announcement In this study, we sequenced the first complete chloroplast (cp) genome of a Peruvian chili pepper landrace, “arnacucho” (Capsicum chinense). This cp genome has a 156,931 bp in length with typical quadripartite structure, containing a large single copy (LSC) region (87,325 bp) and a 17,912 bp small single-copy (SSC) region, separated by two inverted repeat (IR) regions (25,847 bp); and the percentage of GC content was 37.71%. Arnaucho chili pepper chloroplast genome possesses 133 genes that consists of 86 protein-coding genes, 37 tRNA, eight rRNA, and two pseudogenes. Phylogenetic analysis revealed that this Peruvian chili pepper landrace is closely related to the undomesticated species C. galapagoense; all belong to the Capsiceae tribe. Taylor & Francis 2022-01-05 /pmc/articles/PMC8741228/ /pubmed/35005231 http://dx.doi.org/10.1080/23802359.2021.2014366 Text en © 2022 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Arbizu, Carlos I.
Saldaña, Carla L.
Ferro-Mauricio, Rubén D.
Chávez-Galarza, Julio C.
Herrera, Jordan
Contreras-Liza, Sergio
Guerrero-Abad, Juan C.
Maicelo, Jorge L.
Characterization of the complete chloroplast genome of a Peruvian landrace of Capsicum chinense Jacq. (Solanaceae), arnaucho chili pepper
title Characterization of the complete chloroplast genome of a Peruvian landrace of Capsicum chinense Jacq. (Solanaceae), arnaucho chili pepper
title_full Characterization of the complete chloroplast genome of a Peruvian landrace of Capsicum chinense Jacq. (Solanaceae), arnaucho chili pepper
title_fullStr Characterization of the complete chloroplast genome of a Peruvian landrace of Capsicum chinense Jacq. (Solanaceae), arnaucho chili pepper
title_full_unstemmed Characterization of the complete chloroplast genome of a Peruvian landrace of Capsicum chinense Jacq. (Solanaceae), arnaucho chili pepper
title_short Characterization of the complete chloroplast genome of a Peruvian landrace of Capsicum chinense Jacq. (Solanaceae), arnaucho chili pepper
title_sort characterization of the complete chloroplast genome of a peruvian landrace of capsicum chinense jacq. (solanaceae), arnaucho chili pepper
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8741228/
https://www.ncbi.nlm.nih.gov/pubmed/35005231
http://dx.doi.org/10.1080/23802359.2021.2014366
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