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Channel-independent recreation of artefactual signals in chronically recorded local field potentials using machine learning

Acquisition of neuronal signals involves a wide range of devices with specific electrical properties. Combined with other physiological sources within the body, the signals sensed by the devices are often distorted. Sometimes these distortions are visually identifiable, other times, they overlay wit...

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Autores principales: Fabietti, Marcos, Mahmud, Mufti, Lotfi, Ahmad
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Berlin Heidelberg 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8741911/
https://www.ncbi.nlm.nih.gov/pubmed/34997378
http://dx.doi.org/10.1186/s40708-021-00149-x
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author Fabietti, Marcos
Mahmud, Mufti
Lotfi, Ahmad
author_facet Fabietti, Marcos
Mahmud, Mufti
Lotfi, Ahmad
author_sort Fabietti, Marcos
collection PubMed
description Acquisition of neuronal signals involves a wide range of devices with specific electrical properties. Combined with other physiological sources within the body, the signals sensed by the devices are often distorted. Sometimes these distortions are visually identifiable, other times, they overlay with the signal characteristics making them very difficult to detect. To remove these distortions, the recordings are visually inspected and manually processed. However, this manual annotation process is time-consuming and automatic computational methods are needed to identify and remove these artefacts. Most of the existing artefact removal approaches rely on additional information from other recorded channels and fail when global artefacts are present or the affected channels constitute the majority of the recording system. Addressing this issue, this paper reports a novel channel-independent machine learning model to accurately identify and replace the artefactual segments present in the signals. Discarding these artifactual segments by the existing approaches causes discontinuities in the reproduced signals which may introduce errors in subsequent analyses. To avoid this, the proposed method predicts multiple values of the artefactual region using long–short term memory network to recreate the temporal and spectral properties of the recorded signal. The method has been tested on two open-access data sets and incorporated into the open-access SANTIA (SigMate Advanced: a Novel Tool for Identification of Artefacts in Neuronal Signals) toolbox for community use.
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spelling pubmed-87419112022-01-20 Channel-independent recreation of artefactual signals in chronically recorded local field potentials using machine learning Fabietti, Marcos Mahmud, Mufti Lotfi, Ahmad Brain Inform Research Acquisition of neuronal signals involves a wide range of devices with specific electrical properties. Combined with other physiological sources within the body, the signals sensed by the devices are often distorted. Sometimes these distortions are visually identifiable, other times, they overlay with the signal characteristics making them very difficult to detect. To remove these distortions, the recordings are visually inspected and manually processed. However, this manual annotation process is time-consuming and automatic computational methods are needed to identify and remove these artefacts. Most of the existing artefact removal approaches rely on additional information from other recorded channels and fail when global artefacts are present or the affected channels constitute the majority of the recording system. Addressing this issue, this paper reports a novel channel-independent machine learning model to accurately identify and replace the artefactual segments present in the signals. Discarding these artifactual segments by the existing approaches causes discontinuities in the reproduced signals which may introduce errors in subsequent analyses. To avoid this, the proposed method predicts multiple values of the artefactual region using long–short term memory network to recreate the temporal and spectral properties of the recorded signal. The method has been tested on two open-access data sets and incorporated into the open-access SANTIA (SigMate Advanced: a Novel Tool for Identification of Artefacts in Neuronal Signals) toolbox for community use. Springer Berlin Heidelberg 2022-01-07 /pmc/articles/PMC8741911/ /pubmed/34997378 http://dx.doi.org/10.1186/s40708-021-00149-x Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Research
Fabietti, Marcos
Mahmud, Mufti
Lotfi, Ahmad
Channel-independent recreation of artefactual signals in chronically recorded local field potentials using machine learning
title Channel-independent recreation of artefactual signals in chronically recorded local field potentials using machine learning
title_full Channel-independent recreation of artefactual signals in chronically recorded local field potentials using machine learning
title_fullStr Channel-independent recreation of artefactual signals in chronically recorded local field potentials using machine learning
title_full_unstemmed Channel-independent recreation of artefactual signals in chronically recorded local field potentials using machine learning
title_short Channel-independent recreation of artefactual signals in chronically recorded local field potentials using machine learning
title_sort channel-independent recreation of artefactual signals in chronically recorded local field potentials using machine learning
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8741911/
https://www.ncbi.nlm.nih.gov/pubmed/34997378
http://dx.doi.org/10.1186/s40708-021-00149-x
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