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Molecular Epidemiological Characteristics of Gastroenteritis Outbreaks Caused by Norovirus GII.4 Sydney [P31] Strains — China, October 2016–December 2020

INTRODUCTION: Human noroviruses are the leading cause of acute viral gastroenteritis (AGE) worldwide in all age groups. GII.4 strains have been the predominant genotype circulating globally over the last 2 decades and since 2012. GII.4 Sydney viruses have emerged and caused the majority of AGE outbr...

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Autores principales: Zhu, Xi, He, Yaqing, Wei, Xingyan, Kong, Xiangyu, Zhang, Qing, Li, Jingxin, Jin, Miao, Duan, Zhaojun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Editorial Office of CCDCW, Chinese Center for Disease Control and Prevention 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8742140/
https://www.ncbi.nlm.nih.gov/pubmed/35036035
http://dx.doi.org/10.46234/ccdcw2021.276
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author Zhu, Xi
He, Yaqing
Wei, Xingyan
Kong, Xiangyu
Zhang, Qing
Li, Jingxin
Jin, Miao
Duan, Zhaojun
author_facet Zhu, Xi
He, Yaqing
Wei, Xingyan
Kong, Xiangyu
Zhang, Qing
Li, Jingxin
Jin, Miao
Duan, Zhaojun
author_sort Zhu, Xi
collection PubMed
description INTRODUCTION: Human noroviruses are the leading cause of acute viral gastroenteritis (AGE) worldwide in all age groups. GII.4 strains have been the predominant genotype circulating globally over the last 2 decades and since 2012. GII.4 Sydney viruses have emerged and caused the majority of AGE outbreaks worldwide. METHODS: Data from norovirus outbreaks from the laboratory-based surveillance of norovirus outbreaks in China (CaliciNet China) between October 2016–December 2020 were analyzed. RESULTS: During October 2016–December 2020, 1,954 norovirus outbreaks were reported, and positive fecal samples from 1,352 (69.19%) outbreaks were genotyped. GII.4 Sydney [P31] viruses accounted for 2.1% (October 2016–August 2017), 5.5% (September 2017–August 2018), 3.3% (September 2018–August 2018), 26.6% (September 2019–August 2020), and and 1.1% (September 2020–December 2020) of GII outbreaks, respectively. Compared to reference strains of GII.4 Sydney [P31] from 2012 to 2013, 7 amino acid mutations in epitopes[A (297, 372 and 373), B (333), E (414), and H (309 and 310)] and 1 in human histo-blood group antigens binding site at site II 372 were found by analyzing 9 GII.4 Sydney [P31] complete genomic sequences. CONCLUSIONS: This report identified the genomic variation of GII.4 Sydney [P31] from CaliciNet China. Continued surveillance with prompt genotyping and genetic analysis is necessary to monitor the emergence of novel GII.4 variants.
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spelling pubmed-87421402022-01-13 Molecular Epidemiological Characteristics of Gastroenteritis Outbreaks Caused by Norovirus GII.4 Sydney [P31] Strains — China, October 2016–December 2020 Zhu, Xi He, Yaqing Wei, Xingyan Kong, Xiangyu Zhang, Qing Li, Jingxin Jin, Miao Duan, Zhaojun China CDC Wkly Vital Surveillances INTRODUCTION: Human noroviruses are the leading cause of acute viral gastroenteritis (AGE) worldwide in all age groups. GII.4 strains have been the predominant genotype circulating globally over the last 2 decades and since 2012. GII.4 Sydney viruses have emerged and caused the majority of AGE outbreaks worldwide. METHODS: Data from norovirus outbreaks from the laboratory-based surveillance of norovirus outbreaks in China (CaliciNet China) between October 2016–December 2020 were analyzed. RESULTS: During October 2016–December 2020, 1,954 norovirus outbreaks were reported, and positive fecal samples from 1,352 (69.19%) outbreaks were genotyped. GII.4 Sydney [P31] viruses accounted for 2.1% (October 2016–August 2017), 5.5% (September 2017–August 2018), 3.3% (September 2018–August 2018), 26.6% (September 2019–August 2020), and and 1.1% (September 2020–December 2020) of GII outbreaks, respectively. Compared to reference strains of GII.4 Sydney [P31] from 2012 to 2013, 7 amino acid mutations in epitopes[A (297, 372 and 373), B (333), E (414), and H (309 and 310)] and 1 in human histo-blood group antigens binding site at site II 372 were found by analyzing 9 GII.4 Sydney [P31] complete genomic sequences. CONCLUSIONS: This report identified the genomic variation of GII.4 Sydney [P31] from CaliciNet China. Continued surveillance with prompt genotyping and genetic analysis is necessary to monitor the emergence of novel GII.4 variants. Editorial Office of CCDCW, Chinese Center for Disease Control and Prevention 2021-12-31 /pmc/articles/PMC8742140/ /pubmed/35036035 http://dx.doi.org/10.46234/ccdcw2021.276 Text en Copyright and License information: Editorial Office of CCDCW, Chinese Center for Disease Control and Prevention 2021 https://creativecommons.org/licenses/by-nc-sa/4.0/This work is licensed under a Creative Commons Attribution-NonCommercial-Share Alike 4.0 Unported License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc-sa/4.0/ (https://creativecommons.org/licenses/by-nc-sa/4.0/)
spellingShingle Vital Surveillances
Zhu, Xi
He, Yaqing
Wei, Xingyan
Kong, Xiangyu
Zhang, Qing
Li, Jingxin
Jin, Miao
Duan, Zhaojun
Molecular Epidemiological Characteristics of Gastroenteritis Outbreaks Caused by Norovirus GII.4 Sydney [P31] Strains — China, October 2016–December 2020
title Molecular Epidemiological Characteristics of Gastroenteritis Outbreaks Caused by Norovirus GII.4 Sydney [P31] Strains — China, October 2016–December 2020
title_full Molecular Epidemiological Characteristics of Gastroenteritis Outbreaks Caused by Norovirus GII.4 Sydney [P31] Strains — China, October 2016–December 2020
title_fullStr Molecular Epidemiological Characteristics of Gastroenteritis Outbreaks Caused by Norovirus GII.4 Sydney [P31] Strains — China, October 2016–December 2020
title_full_unstemmed Molecular Epidemiological Characteristics of Gastroenteritis Outbreaks Caused by Norovirus GII.4 Sydney [P31] Strains — China, October 2016–December 2020
title_short Molecular Epidemiological Characteristics of Gastroenteritis Outbreaks Caused by Norovirus GII.4 Sydney [P31] Strains — China, October 2016–December 2020
title_sort molecular epidemiological characteristics of gastroenteritis outbreaks caused by norovirus gii.4 sydney [p31] strains — china, october 2016–december 2020
topic Vital Surveillances
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8742140/
https://www.ncbi.nlm.nih.gov/pubmed/35036035
http://dx.doi.org/10.46234/ccdcw2021.276
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