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A COVINDEX based on a GAM beta regression model with an application to the COVID-19 pandemic in Italy
Detecting changes in COVID-19 disease transmission over time is a key indicator of epidemic growth. Near real-time monitoring of the pandemic growth is crucial for policy makers and public health officials who need to make informed decisions about whether to enforce lockdowns or allow certain activi...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Springer Berlin Heidelberg
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8743080/ https://www.ncbi.nlm.nih.gov/pubmed/35035344 http://dx.doi.org/10.1007/s10260-021-00617-y |
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author | Scrucca, Luca |
author_facet | Scrucca, Luca |
author_sort | Scrucca, Luca |
collection | PubMed |
description | Detecting changes in COVID-19 disease transmission over time is a key indicator of epidemic growth. Near real-time monitoring of the pandemic growth is crucial for policy makers and public health officials who need to make informed decisions about whether to enforce lockdowns or allow certain activities. The effective reproduction number [Formula: see text] is the standard index used in many countries for this goal. However, it is known that due to the delays between infection and case registration, its use for decision making is somewhat limited. In this paper a near real-time COVINDEX is proposed for monitoring the evolution of the pandemic. The index is computed from predictions obtained from a GAM beta regression for modelling the test positive rate as a function of time. The proposal is illustrated using data on COVID-19 pandemic in Italy and compared with [Formula: see text] . A simple chart is also proposed for monitoring local and national outbreaks by policy makers and public health officials. |
format | Online Article Text |
id | pubmed-8743080 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Springer Berlin Heidelberg |
record_format | MEDLINE/PubMed |
spelling | pubmed-87430802022-01-10 A COVINDEX based on a GAM beta regression model with an application to the COVID-19 pandemic in Italy Scrucca, Luca Stat Methods Appt Original Paper Detecting changes in COVID-19 disease transmission over time is a key indicator of epidemic growth. Near real-time monitoring of the pandemic growth is crucial for policy makers and public health officials who need to make informed decisions about whether to enforce lockdowns or allow certain activities. The effective reproduction number [Formula: see text] is the standard index used in many countries for this goal. However, it is known that due to the delays between infection and case registration, its use for decision making is somewhat limited. In this paper a near real-time COVINDEX is proposed for monitoring the evolution of the pandemic. The index is computed from predictions obtained from a GAM beta regression for modelling the test positive rate as a function of time. The proposal is illustrated using data on COVID-19 pandemic in Italy and compared with [Formula: see text] . A simple chart is also proposed for monitoring local and national outbreaks by policy makers and public health officials. Springer Berlin Heidelberg 2022-01-10 2022 /pmc/articles/PMC8743080/ /pubmed/35035344 http://dx.doi.org/10.1007/s10260-021-00617-y Text en © Springer-Verlag GmbH Germany, part of Springer Nature 2021 This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic. |
spellingShingle | Original Paper Scrucca, Luca A COVINDEX based on a GAM beta regression model with an application to the COVID-19 pandemic in Italy |
title | A COVINDEX based on a GAM beta regression model with an application to the COVID-19 pandemic in Italy |
title_full | A COVINDEX based on a GAM beta regression model with an application to the COVID-19 pandemic in Italy |
title_fullStr | A COVINDEX based on a GAM beta regression model with an application to the COVID-19 pandemic in Italy |
title_full_unstemmed | A COVINDEX based on a GAM beta regression model with an application to the COVID-19 pandemic in Italy |
title_short | A COVINDEX based on a GAM beta regression model with an application to the COVID-19 pandemic in Italy |
title_sort | covindex based on a gam beta regression model with an application to the covid-19 pandemic in italy |
topic | Original Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8743080/ https://www.ncbi.nlm.nih.gov/pubmed/35035344 http://dx.doi.org/10.1007/s10260-021-00617-y |
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