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Prediction of Optimal Conditions of Hydrogenation Reaction Using the Likelihood Ranking Approach

The selection of experimental conditions leading to a reasonable yield is an important and essential element for the automated development of a synthesis plan and the subsequent synthesis of the target compound. The classical QSPR approach, requiring one-to-one correspondence between chemical struct...

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Autores principales: Afonina, Valentina A., Mazitov, Daniyar A., Nurmukhametova, Albina, Shevelev, Maxim D., Khasanova, Dina A., Nugmanov, Ramil I., Burilov, Vladimir A., Madzhidov, Timur I., Varnek, Alexandre
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8745269/
https://www.ncbi.nlm.nih.gov/pubmed/35008674
http://dx.doi.org/10.3390/ijms23010248
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author Afonina, Valentina A.
Mazitov, Daniyar A.
Nurmukhametova, Albina
Shevelev, Maxim D.
Khasanova, Dina A.
Nugmanov, Ramil I.
Burilov, Vladimir A.
Madzhidov, Timur I.
Varnek, Alexandre
author_facet Afonina, Valentina A.
Mazitov, Daniyar A.
Nurmukhametova, Albina
Shevelev, Maxim D.
Khasanova, Dina A.
Nugmanov, Ramil I.
Burilov, Vladimir A.
Madzhidov, Timur I.
Varnek, Alexandre
author_sort Afonina, Valentina A.
collection PubMed
description The selection of experimental conditions leading to a reasonable yield is an important and essential element for the automated development of a synthesis plan and the subsequent synthesis of the target compound. The classical QSPR approach, requiring one-to-one correspondence between chemical structure and a target property, can be used for optimal reaction conditions prediction only on a limited scale when only one condition component (e.g., catalyst or solvent) is considered. However, a particular reaction can proceed under several different conditions. In this paper, we describe the Likelihood Ranking Model representing an artificial neural network that outputs a list of different conditions ranked according to their suitability to a given chemical transformation. Benchmarking calculations demonstrated that our model outperformed some popular approaches to the theoretical assessment of reaction conditions, such as k Nearest Neighbors, and a recurrent artificial neural network performance prediction of condition components (reagents, solvents, catalysts, and temperature). The ability of the Likelihood Ranking model trained on a hydrogenation reactions dataset, (~42,000 reactions) from Reaxys(®) database, to propose conditions that led to the desired product was validated experimentally on a set of three reactions with rich selectivity issues.
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spelling pubmed-87452692022-01-11 Prediction of Optimal Conditions of Hydrogenation Reaction Using the Likelihood Ranking Approach Afonina, Valentina A. Mazitov, Daniyar A. Nurmukhametova, Albina Shevelev, Maxim D. Khasanova, Dina A. Nugmanov, Ramil I. Burilov, Vladimir A. Madzhidov, Timur I. Varnek, Alexandre Int J Mol Sci Article The selection of experimental conditions leading to a reasonable yield is an important and essential element for the automated development of a synthesis plan and the subsequent synthesis of the target compound. The classical QSPR approach, requiring one-to-one correspondence between chemical structure and a target property, can be used for optimal reaction conditions prediction only on a limited scale when only one condition component (e.g., catalyst or solvent) is considered. However, a particular reaction can proceed under several different conditions. In this paper, we describe the Likelihood Ranking Model representing an artificial neural network that outputs a list of different conditions ranked according to their suitability to a given chemical transformation. Benchmarking calculations demonstrated that our model outperformed some popular approaches to the theoretical assessment of reaction conditions, such as k Nearest Neighbors, and a recurrent artificial neural network performance prediction of condition components (reagents, solvents, catalysts, and temperature). The ability of the Likelihood Ranking model trained on a hydrogenation reactions dataset, (~42,000 reactions) from Reaxys(®) database, to propose conditions that led to the desired product was validated experimentally on a set of three reactions with rich selectivity issues. MDPI 2021-12-27 /pmc/articles/PMC8745269/ /pubmed/35008674 http://dx.doi.org/10.3390/ijms23010248 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Afonina, Valentina A.
Mazitov, Daniyar A.
Nurmukhametova, Albina
Shevelev, Maxim D.
Khasanova, Dina A.
Nugmanov, Ramil I.
Burilov, Vladimir A.
Madzhidov, Timur I.
Varnek, Alexandre
Prediction of Optimal Conditions of Hydrogenation Reaction Using the Likelihood Ranking Approach
title Prediction of Optimal Conditions of Hydrogenation Reaction Using the Likelihood Ranking Approach
title_full Prediction of Optimal Conditions of Hydrogenation Reaction Using the Likelihood Ranking Approach
title_fullStr Prediction of Optimal Conditions of Hydrogenation Reaction Using the Likelihood Ranking Approach
title_full_unstemmed Prediction of Optimal Conditions of Hydrogenation Reaction Using the Likelihood Ranking Approach
title_short Prediction of Optimal Conditions of Hydrogenation Reaction Using the Likelihood Ranking Approach
title_sort prediction of optimal conditions of hydrogenation reaction using the likelihood ranking approach
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8745269/
https://www.ncbi.nlm.nih.gov/pubmed/35008674
http://dx.doi.org/10.3390/ijms23010248
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