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Molecular Structure of Nickel Octamethylporphyrin—Rare Experimental Evidence of a Ruffling Effect in Gas Phase
The structure of a free nickel (II) octamethylporphyrin (NiOMP) molecule was determined for the first time through a combined gas-phase electron diffraction (GED) and mass spectrometry (MS) experiment, as well as through quantum chemical (QC) calculations. Density functional theory (DFT) calculation...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8745403/ https://www.ncbi.nlm.nih.gov/pubmed/35008747 http://dx.doi.org/10.3390/ijms23010320 |
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author | Pogonin, Alexander E. Otlyotov, Arseniy A. Minenkov, Yury Semeikin, Alexander S. Zhabanov, Yuriy A. Shlykov, Sergey A. Girichev, Georgiy V. |
author_facet | Pogonin, Alexander E. Otlyotov, Arseniy A. Minenkov, Yury Semeikin, Alexander S. Zhabanov, Yuriy A. Shlykov, Sergey A. Girichev, Georgiy V. |
author_sort | Pogonin, Alexander E. |
collection | PubMed |
description | The structure of a free nickel (II) octamethylporphyrin (NiOMP) molecule was determined for the first time through a combined gas-phase electron diffraction (GED) and mass spectrometry (MS) experiment, as well as through quantum chemical (QC) calculations. Density functional theory (DFT) calculations do not provide an unambiguous answer about the planarity or non-planar distortion of the NiOMP skeleton. The GED refinement in such cases is non-trivial. Several approaches to the inverse problem solution were used. The obtained results allow us to argue that the ruffling effect is manifested in the NiOMP molecule. The minimal critical distance between the central atom of the metal and nitrogen atoms of the coordination cavity that provokes ruffling distortion in metal porphyrins is about 1.96 Å. |
format | Online Article Text |
id | pubmed-8745403 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-87454032022-01-11 Molecular Structure of Nickel Octamethylporphyrin—Rare Experimental Evidence of a Ruffling Effect in Gas Phase Pogonin, Alexander E. Otlyotov, Arseniy A. Minenkov, Yury Semeikin, Alexander S. Zhabanov, Yuriy A. Shlykov, Sergey A. Girichev, Georgiy V. Int J Mol Sci Article The structure of a free nickel (II) octamethylporphyrin (NiOMP) molecule was determined for the first time through a combined gas-phase electron diffraction (GED) and mass spectrometry (MS) experiment, as well as through quantum chemical (QC) calculations. Density functional theory (DFT) calculations do not provide an unambiguous answer about the planarity or non-planar distortion of the NiOMP skeleton. The GED refinement in such cases is non-trivial. Several approaches to the inverse problem solution were used. The obtained results allow us to argue that the ruffling effect is manifested in the NiOMP molecule. The minimal critical distance between the central atom of the metal and nitrogen atoms of the coordination cavity that provokes ruffling distortion in metal porphyrins is about 1.96 Å. MDPI 2021-12-28 /pmc/articles/PMC8745403/ /pubmed/35008747 http://dx.doi.org/10.3390/ijms23010320 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Pogonin, Alexander E. Otlyotov, Arseniy A. Minenkov, Yury Semeikin, Alexander S. Zhabanov, Yuriy A. Shlykov, Sergey A. Girichev, Georgiy V. Molecular Structure of Nickel Octamethylporphyrin—Rare Experimental Evidence of a Ruffling Effect in Gas Phase |
title | Molecular Structure of Nickel Octamethylporphyrin—Rare Experimental Evidence of a Ruffling Effect in Gas Phase |
title_full | Molecular Structure of Nickel Octamethylporphyrin—Rare Experimental Evidence of a Ruffling Effect in Gas Phase |
title_fullStr | Molecular Structure of Nickel Octamethylporphyrin—Rare Experimental Evidence of a Ruffling Effect in Gas Phase |
title_full_unstemmed | Molecular Structure of Nickel Octamethylporphyrin—Rare Experimental Evidence of a Ruffling Effect in Gas Phase |
title_short | Molecular Structure of Nickel Octamethylporphyrin—Rare Experimental Evidence of a Ruffling Effect in Gas Phase |
title_sort | molecular structure of nickel octamethylporphyrin—rare experimental evidence of a ruffling effect in gas phase |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8745403/ https://www.ncbi.nlm.nih.gov/pubmed/35008747 http://dx.doi.org/10.3390/ijms23010320 |
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