Cargando…
Transcriptome Analysis Reveals Candidate Genes Involved in Light-Induced Primordium Differentiation in Pleurotus eryngii
Pleurotus eryngii, a highly valued edible fungus, is one of the major commercially cultivated mushrooms in China. The development of P. eryngii, especially during the stage of primordium differentiation, is easily affected by light. However, the molecular mechanism underlying the response of primord...
Autores principales: | , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2021
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8745762/ https://www.ncbi.nlm.nih.gov/pubmed/35008859 http://dx.doi.org/10.3390/ijms23010435 |
_version_ | 1784630424165679104 |
---|---|
author | Ye, Dou Du, Fang Hu, Qingxiu Zou, Yajie Bai, Xue |
author_facet | Ye, Dou Du, Fang Hu, Qingxiu Zou, Yajie Bai, Xue |
author_sort | Ye, Dou |
collection | PubMed |
description | Pleurotus eryngii, a highly valued edible fungus, is one of the major commercially cultivated mushrooms in China. The development of P. eryngii, especially during the stage of primordium differentiation, is easily affected by light. However, the molecular mechanism underlying the response of primordium differentiation to light remains unknown. In the present study, primordium expression profiles under blue-light stimulation, red-light stimulation, and exposure to darkness were compared using high-throughput sequencing. A total of 16,321 differentially expressed genes (DEGs) were identified from three comparisons. GO enrichment analysis showed that a large number of DEGs were related to light stimulation and amino acid biosynthesis. KEGG analyses demonstrated that the MAPK signaling pathway, oxidative phosphorylation pathway, and RNA transport were most active during primordium differentiation. Furthermore, it was predicted that the blue-light photoreceptor WC-1 and Deoxyribodipyrimidine photolyase PHR play important roles in the primordium differentiation of P. eryngii. Taken together, the results of this study provide a speculative mechanism that light induces primordium differentiation and a foundation for further research on fruiting body development in P. eryngii. |
format | Online Article Text |
id | pubmed-8745762 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-87457622022-01-11 Transcriptome Analysis Reveals Candidate Genes Involved in Light-Induced Primordium Differentiation in Pleurotus eryngii Ye, Dou Du, Fang Hu, Qingxiu Zou, Yajie Bai, Xue Int J Mol Sci Article Pleurotus eryngii, a highly valued edible fungus, is one of the major commercially cultivated mushrooms in China. The development of P. eryngii, especially during the stage of primordium differentiation, is easily affected by light. However, the molecular mechanism underlying the response of primordium differentiation to light remains unknown. In the present study, primordium expression profiles under blue-light stimulation, red-light stimulation, and exposure to darkness were compared using high-throughput sequencing. A total of 16,321 differentially expressed genes (DEGs) were identified from three comparisons. GO enrichment analysis showed that a large number of DEGs were related to light stimulation and amino acid biosynthesis. KEGG analyses demonstrated that the MAPK signaling pathway, oxidative phosphorylation pathway, and RNA transport were most active during primordium differentiation. Furthermore, it was predicted that the blue-light photoreceptor WC-1 and Deoxyribodipyrimidine photolyase PHR play important roles in the primordium differentiation of P. eryngii. Taken together, the results of this study provide a speculative mechanism that light induces primordium differentiation and a foundation for further research on fruiting body development in P. eryngii. MDPI 2021-12-31 /pmc/articles/PMC8745762/ /pubmed/35008859 http://dx.doi.org/10.3390/ijms23010435 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Ye, Dou Du, Fang Hu, Qingxiu Zou, Yajie Bai, Xue Transcriptome Analysis Reveals Candidate Genes Involved in Light-Induced Primordium Differentiation in Pleurotus eryngii |
title | Transcriptome Analysis Reveals Candidate Genes Involved in Light-Induced Primordium Differentiation in Pleurotus eryngii |
title_full | Transcriptome Analysis Reveals Candidate Genes Involved in Light-Induced Primordium Differentiation in Pleurotus eryngii |
title_fullStr | Transcriptome Analysis Reveals Candidate Genes Involved in Light-Induced Primordium Differentiation in Pleurotus eryngii |
title_full_unstemmed | Transcriptome Analysis Reveals Candidate Genes Involved in Light-Induced Primordium Differentiation in Pleurotus eryngii |
title_short | Transcriptome Analysis Reveals Candidate Genes Involved in Light-Induced Primordium Differentiation in Pleurotus eryngii |
title_sort | transcriptome analysis reveals candidate genes involved in light-induced primordium differentiation in pleurotus eryngii |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8745762/ https://www.ncbi.nlm.nih.gov/pubmed/35008859 http://dx.doi.org/10.3390/ijms23010435 |
work_keys_str_mv | AT yedou transcriptomeanalysisrevealscandidategenesinvolvedinlightinducedprimordiumdifferentiationinpleurotuseryngii AT dufang transcriptomeanalysisrevealscandidategenesinvolvedinlightinducedprimordiumdifferentiationinpleurotuseryngii AT huqingxiu transcriptomeanalysisrevealscandidategenesinvolvedinlightinducedprimordiumdifferentiationinpleurotuseryngii AT zouyajie transcriptomeanalysisrevealscandidategenesinvolvedinlightinducedprimordiumdifferentiationinpleurotuseryngii AT baixue transcriptomeanalysisrevealscandidategenesinvolvedinlightinducedprimordiumdifferentiationinpleurotuseryngii |